==3052912== Memcheck, a memory error detector ==3052912== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3052912== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3052912== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info ==3052912== Parent PID: 3051093 ==3052912== ==3052912== ==3052912== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3052912== Open file descriptor 12: ==3052912== at 0xEB6822D: pipe (pipe.c:29) ==3052912== by 0x18A2107D: ??? ==3052912== by 0x140224CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3052912== by 0x10808418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3052912== by 0x107A1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3052912== by 0xF498D38: PetscInitialize (pinit.c:924) ==3052912== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3052912== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3052912== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3052912== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3052912== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3052912== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3052912== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3052912== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==3052912== ==3052912== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3052912== at 0xEB6CBCC: __open_nocancel (open64_nocancel.c:39) ==3052912== by 0xEAF0C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3052912== by 0xE4A3822: ??? ==3052912== by 0xE4A396F: ??? ==3052912== by 0x140C76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3052912== by 0x140C7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3052912== by 0x1407D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3052912== by 0x140222DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3052912== by 0x10808418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3052912== by 0x107A1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3052912== by 0xF498D38: PetscInitialize (pinit.c:924) ==3052912== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3052912== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3052912== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3052912== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3052912== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3052912== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3052912== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3052912== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==3052912== ==3052912== Open file descriptor 116: ==3052912== ==3052912== ==3052912== Open file descriptor 112: ==3052912== ==3052912== ==3052912== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt ==3052912== ==3052912== ==3052912== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3052912== ==3052912== ==3052912== ==3052912== HEAP SUMMARY: ==3052912== in use at exit: 700,759 bytes in 9,378 blocks ==3052912== total heap usage: 1,126,581 allocs, 1,117,203 frees, 1,431,023,886 bytes allocated ==3052912== ==3052912== LEAK SUMMARY: ==3052912== definitely lost: 0 bytes in 0 blocks ==3052912== indirectly lost: 0 bytes in 0 blocks ==3052912== possibly lost: 0 bytes in 0 blocks ==3052912== still reachable: 56 bytes in 3 blocks ==3052912== suppressed: 700,703 bytes in 9,375 blocks ==3052912== Reachable blocks (those to which a pointer was found) are not shown. ==3052912== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3052912== ==3052912== For lists of detected and suppressed errors, rerun with: -s ==3052912== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)