==3165695== Memcheck, a memory error detector ==3165695== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3165695== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3165695== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==3165695== Parent PID: 3163233 ==3165695== ==3165695== ==3165695== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3165695== Open file descriptor 12: ==3165695== at 0xF10F22D: pipe (pipe.c:29) ==3165695== by 0x18A1F07D: ??? ==3165695== by 0x141464CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3165695== by 0x10D6B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3165695== by 0x10D04D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3165695== by 0xF9FBD38: PetscInitialize (pinit.c:924) ==3165695== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3165695== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3165695== by 0x1D3486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3165695== by 0x1CCDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3165695== by 0x1D0554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3165695== by 0x1D03F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3165695== by 0x1D0A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3165695== by 0x1CB1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==3165695== ==3165695== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3165695== at 0xF113BCC: __open_nocancel (open64_nocancel.c:39) ==3165695== by 0xF097C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3165695== by 0xE4A3822: ??? ==3165695== by 0xE4A396F: ??? ==3165695== by 0x141EB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3165695== by 0x141EB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3165695== by 0x141A1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3165695== by 0x141462DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3165695== by 0x10D6B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3165695== by 0x10D04D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3165695== by 0xF9FBD38: PetscInitialize (pinit.c:924) ==3165695== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3165695== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3165695== by 0x1D3486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3165695== by 0x1CCDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3165695== by 0x1D0554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3165695== by 0x1D03F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3165695== by 0x1D0A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3165695== by 0x1CB1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==3165695== ==3165695== Open file descriptor 116: ==3165695== ==3165695== ==3165695== Open file descriptor 112: ==3165695== ==3165695== ==3165695== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==3165695== ==3165695== ==3165695== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3165695== ==3165695== ==3165695== ==3165695== HEAP SUMMARY: ==3165695== in use at exit: 700,688 bytes in 9,374 blocks ==3165695== total heap usage: 7,097,330 allocs, 7,087,956 frees, 8,099,001,113 bytes allocated ==3165695== ==3165695== LEAK SUMMARY: ==3165695== definitely lost: 0 bytes in 0 blocks ==3165695== indirectly lost: 0 bytes in 0 blocks ==3165695== possibly lost: 0 bytes in 0 blocks ==3165695== still reachable: 56 bytes in 3 blocks ==3165695== suppressed: 700,632 bytes in 9,371 blocks ==3165695== Reachable blocks (those to which a pointer was found) are not shown. ==3165695== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3165695== ==3165695== For lists of detected and suppressed errors, rerun with: -s ==3165695== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)