==3178697== Memcheck, a memory error detector ==3178697== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3178697== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3178697== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==3178697== Parent PID: 3163233 ==3178697== ==3178697== ==3178697== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3178697== Open file descriptor 12: ==3178697== at 0xEF0522D: pipe (pipe.c:29) ==3178697== by 0x18A1F07D: ??? ==3178697== by 0x140294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3178697== by 0x10808418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3178697== by 0x107A1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3178697== by 0xF496D38: PetscInitialize (pinit.c:924) ==3178697== by 0xE80C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3178697== by 0xE80C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3178697== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3178697== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3178697== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3178697== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3178697== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3178697== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==3178697== ==3178697== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3178697== at 0xEF09BCC: __open_nocancel (open64_nocancel.c:39) ==3178697== by 0xEE8DC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3178697== by 0xE840822: ??? ==3178697== by 0xE84096F: ??? ==3178697== by 0x140CE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3178697== by 0x140CE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3178697== by 0x14084922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3178697== by 0x140292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3178697== by 0x10808418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3178697== by 0x107A1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3178697== by 0xF496D38: PetscInitialize (pinit.c:924) ==3178697== by 0xE80C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3178697== by 0xE80C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3178697== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3178697== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3178697== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3178697== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3178697== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3178697== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==3178697== ==3178697== Open file descriptor 116: ==3178697== ==3178697== ==3178697== Open file descriptor 112: ==3178697== ==3178697== ==3178697== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==3178697== ==3178697== ==3178697== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3178697== ==3178697== ==3178697== ==3178697== HEAP SUMMARY: ==3178697== in use at exit: 700,759 bytes in 9,378 blocks ==3178697== total heap usage: 2,085,932 allocs, 2,076,554 frees, 1,689,930,498 bytes allocated ==3178697== ==3178697== LEAK SUMMARY: ==3178697== definitely lost: 0 bytes in 0 blocks ==3178697== indirectly lost: 0 bytes in 0 blocks ==3178697== possibly lost: 0 bytes in 0 blocks ==3178697== still reachable: 56 bytes in 3 blocks ==3178697== suppressed: 700,703 bytes in 9,375 blocks ==3178697== Reachable blocks (those to which a pointer was found) are not shown. ==3178697== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3178697== ==3178697== For lists of detected and suppressed errors, rerun with: -s ==3178697== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)