==232921== Memcheck, a memory error detector ==232921== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==232921== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==232921== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainDistributedMesh -malloc_debug -malloc_dump -memory_info ==232921== Parent PID: 216543 ==232921== ==232921== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==232921== This could cause spurious value errors to appear. ==232921== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==232921== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==232921== This could cause spurious value errors to appear. ==232921== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==232921== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==232921== This could cause spurious value errors to appear. ==232921== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==232921== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==232921== This could cause spurious value errors to appear. ==232921== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==232921== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==232921== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==232921== Warning: set address range perms: large range [0x1732e000, 0x3732d000) (noaccess) ==232921== ==232921== FILE DESCRIPTORS: 14 open (3 std) at exit. ==232921== Open file descriptor 23: /dev/nvidia0 ==232921== at 0xB87C764: open (open64.c:41) ==232921== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x16466B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x16354026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x163D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0xF219023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==232921== by 0xF219FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==232921== by 0x13FA646A: ??? ==232921== by 0xF86AF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==232921== by 0xF846B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==232921== by 0xF7F7CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==232921== by 0xF724EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==232921== by 0x13F94F03: ??? ==232921== by 0xF7594CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==232921== by 0xB16B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==232921== by 0xB104D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==232921== by 0x9DD0D38: PetscInitialize (pinit.c:924) ==232921== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==232921== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==232921== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==232921== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==232921== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==232921== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==232921== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==232921== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) ==232921== ==232921== Open file descriptor 22: /dev/nvidia0 ==232921== at 0xB87C764: open (open64.c:41) ==232921== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x1635407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x163D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0xF219023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==232921== by 0xF219FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==232921== by 0x13FA646A: ??? ==232921== by 0xF86AF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==232921== by 0xF846B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==232921== by 0xF7F7CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==232921== by 0xF724EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==232921== by 0x13F94F03: ??? ==232921== by 0xF7594CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==232921== by 0xB16B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==232921== by 0xB104D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==232921== by 0x9DD0D38: PetscInitialize (pinit.c:924) ==232921== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==232921== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==232921== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==232921== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==232921== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==232921== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==232921== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==232921== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) ==232921== ==232921== Open file descriptor 21: /dev/nvidia0 ==232921== at 0xB87C764: open (open64.c:41) ==232921== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x163CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x1635DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x163D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0xF219023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==232921== by 0xF219FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==232921== by 0x13FA646A: ??? ==232921== by 0xF86AF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==232921== by 0xF846B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==232921== by 0xF7F7CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==232921== by 0xF724EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==232921== by 0x13F94F03: ??? ==232921== by 0xF7594CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==232921== by 0xB16B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==232921== by 0xB104D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==232921== by 0x9DD0D38: PetscInitialize (pinit.c:924) ==232921== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==232921== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==232921== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==232921== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==232921== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==232921== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==232921== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==232921== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) ==232921== ==232921== Open file descriptor 20: /dev/nvidia-uvm ==232921== at 0xB87C764: open (open64.c:41) ==232921== by 0x16236F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x1621A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0xF219023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==232921== by 0xF219FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==232921== by 0x13FA646A: ??? ==232921== by 0xF86AF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==232921== by 0xF846B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==232921== by 0xF7F7CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==232921== by 0xF724EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==232921== by 0x13F94F03: ??? ==232921== by 0xF7594CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==232921== by 0xB16B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==232921== by 0xB104D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==232921== by 0x9DD0D38: PetscInitialize (pinit.c:924) ==232921== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==232921== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==232921== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==232921== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==232921== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==232921== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==232921== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==232921== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) ==232921== ==232921== Open file descriptor 19: /dev/nvidiactl ==232921== at 0xB87C764: open (open64.c:41) ==232921== by 0x163CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x163D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x1621A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==232921== by 0xF219023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==232921== by 0xF219FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==232921== by 0x13FA646A: ??? ==232921== by 0xF86AF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==232921== by 0xF846B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==232921== by 0xF7F7CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==232921== by 0xF724EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==232921== by 0x13F94F03: ??? ==232921== by 0xF7594CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==232921== by 0xB16B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==232921== by 0xB104D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==232921== by 0x9DD0D38: PetscInitialize (pinit.c:924) ==232921== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==232921== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==232921== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==232921== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==232921== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==232921== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==232921== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==232921== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) ==232921== ==232921== Open file descriptor 12: ==232921== at 0xB87D22D: pipe (pipe.c:29) ==232921== by 0x13F9407D: ??? ==232921== by 0xF7594CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==232921== by 0xB16B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==232921== by 0xB104D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==232921== by 0x9DD0D38: PetscInitialize (pinit.c:924) ==232921== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==232921== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==232921== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==232921== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==232921== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==232921== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==232921== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==232921== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) ==232921== ==232921== Open file descriptor 8: /dev/shm/open_mpi.0000 ==232921== at 0xB881BCC: __open_nocancel (open64_nocancel.c:39) ==232921== by 0xB805C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==232921== by 0xB05A822: ??? ==232921== by 0xB05A96F: ??? ==232921== by 0xF7FE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==232921== by 0xF7FE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==232921== by 0xF7B4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==232921== by 0xF7592DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==232921== by 0xB16B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==232921== by 0xB104D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==232921== by 0x9DD0D38: PetscInitialize (pinit.c:924) ==232921== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==232921== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==232921== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==232921== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==232921== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==232921== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==232921== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==232921== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) ==232921== ==232921== Open file descriptor 109: ==232921== ==232921== ==232921== Open file descriptor 106: ==232921== ==232921== ==232921== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainDistributedMesh_valgrind.txt ==232921== ==232921== ==232921== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==232921== ==232921== ==232921== ==232921== HEAP SUMMARY: ==232921== in use at exit: 1,876,335 bytes in 11,748 blocks ==232921== total heap usage: 436,672 allocs, 424,924 frees, 1,632,008,665 bytes allocated ==232921== ==232921== LEAK SUMMARY: ==232921== definitely lost: 0 bytes in 0 blocks ==232921== indirectly lost: 0 bytes in 0 blocks ==232921== possibly lost: 0 bytes in 0 blocks ==232921== still reachable: 24 bytes in 2 blocks ==232921== suppressed: 1,876,311 bytes in 11,746 blocks ==232921== Reachable blocks (those to which a pointer was found) are not shown. ==232921== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==232921== ==232921== For lists of detected and suppressed errors, rerun with: -s ==232921== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 71 from 54)