==233013== Memcheck, a memory error detector ==233013== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==233013== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==233013== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainWithBathProblem -malloc_debug -malloc_dump -memory_info ==233013== Parent PID: 216543 ==233013== ==233013== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==233013== This could cause spurious value errors to appear. ==233013== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==233013== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==233013== This could cause spurious value errors to appear. ==233013== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==233013== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==233013== This could cause spurious value errors to appear. ==233013== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==233013== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==233013== This could cause spurious value errors to appear. ==233013== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==233013== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==233013== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==233013== Warning: set address range perms: large range [0x1732e000, 0x3732d000) (noaccess) ==233013== ==233013== FILE DESCRIPTORS: 14 open (3 std) at exit. ==233013== Open file descriptor 23: /dev/nvidia0 ==233013== at 0xA8DA764: open (open64.c:41) ==233013== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x16466B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x16354026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x163D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0xF270023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==233013== by 0xF270FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==233013== by 0x13FA746A: ??? ==233013== by 0xF8C1F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==233013== by 0xF89DB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==233013== by 0xF84ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==233013== by 0xF77BEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==233013== by 0x13F95F03: ??? ==233013== by 0xF7B04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==233013== by 0xBFD5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==233013== by 0xBF6ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==233013== by 0xAC65D38: PetscInitialize (pinit.c:924) ==233013== by 0xA0D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==233013== by 0xA0D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==233013== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==233013== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==233013== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==233013== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==233013== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==233013== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) ==233013== ==233013== Open file descriptor 22: /dev/nvidia0 ==233013== at 0xA8DA764: open (open64.c:41) ==233013== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x1635407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x163D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0xF270023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==233013== by 0xF270FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==233013== by 0x13FA746A: ??? ==233013== by 0xF8C1F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==233013== by 0xF89DB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==233013== by 0xF84ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==233013== by 0xF77BEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==233013== by 0x13F95F03: ??? ==233013== by 0xF7B04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==233013== by 0xBFD5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==233013== by 0xBF6ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==233013== by 0xAC65D38: PetscInitialize (pinit.c:924) ==233013== by 0xA0D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==233013== by 0xA0D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==233013== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==233013== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==233013== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==233013== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==233013== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==233013== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) ==233013== ==233013== Open file descriptor 21: /dev/nvidia0 ==233013== at 0xA8DA764: open (open64.c:41) ==233013== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x163CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x1635DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x163D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0xF270023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==233013== by 0xF270FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==233013== by 0x13FA746A: ??? ==233013== by 0xF8C1F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==233013== by 0xF89DB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==233013== by 0xF84ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==233013== by 0xF77BEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==233013== by 0x13F95F03: ??? ==233013== by 0xF7B04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==233013== by 0xBFD5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==233013== by 0xBF6ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==233013== by 0xAC65D38: PetscInitialize (pinit.c:924) ==233013== by 0xA0D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==233013== by 0xA0D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==233013== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==233013== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==233013== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==233013== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==233013== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==233013== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) ==233013== ==233013== Open file descriptor 20: /dev/nvidia-uvm ==233013== at 0xA8DA764: open (open64.c:41) ==233013== by 0x16236F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x1621A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0xF270023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==233013== by 0xF270FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==233013== by 0x13FA746A: ??? ==233013== by 0xF8C1F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==233013== by 0xF89DB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==233013== by 0xF84ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==233013== by 0xF77BEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==233013== by 0x13F95F03: ??? ==233013== by 0xF7B04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==233013== by 0xBFD5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==233013== by 0xBF6ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==233013== by 0xAC65D38: PetscInitialize (pinit.c:924) ==233013== by 0xA0D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==233013== by 0xA0D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==233013== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==233013== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==233013== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==233013== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==233013== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==233013== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) ==233013== ==233013== Open file descriptor 19: /dev/nvidiactl ==233013== at 0xA8DA764: open (open64.c:41) ==233013== by 0x163CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x163D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x1621A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==233013== by 0xF270023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==233013== by 0xF270FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==233013== by 0x13FA746A: ??? ==233013== by 0xF8C1F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==233013== by 0xF89DB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==233013== by 0xF84ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==233013== by 0xF77BEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==233013== by 0x13F95F03: ??? ==233013== by 0xF7B04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==233013== by 0xBFD5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==233013== by 0xBF6ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==233013== by 0xAC65D38: PetscInitialize (pinit.c:924) ==233013== by 0xA0D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==233013== by 0xA0D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==233013== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==233013== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==233013== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==233013== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==233013== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==233013== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) ==233013== ==233013== Open file descriptor 12: ==233013== at 0xA8DB22D: pipe (pipe.c:29) ==233013== by 0x13F9507D: ??? ==233013== by 0xF7B04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==233013== by 0xBFD5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==233013== by 0xBF6ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==233013== by 0xAC65D38: PetscInitialize (pinit.c:924) ==233013== by 0xA0D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==233013== by 0xA0D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==233013== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==233013== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==233013== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==233013== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==233013== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==233013== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) ==233013== ==233013== Open file descriptor 8: /dev/shm/open_mpi.0000 ==233013== at 0xA8DFBCC: __open_nocancel (open64_nocancel.c:39) ==233013== by 0xA863C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==233013== by 0xA108822: ??? ==233013== by 0xA10896F: ??? ==233013== by 0xF8556DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==233013== by 0xF855938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==233013== by 0xF80B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==233013== by 0xF7B02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==233013== by 0xBFD5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==233013== by 0xBF6ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==233013== by 0xAC65D38: PetscInitialize (pinit.c:924) ==233013== by 0xA0D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==233013== by 0xA0D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==233013== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==233013== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==233013== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==233013== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==233013== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==233013== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) ==233013== ==233013== Open file descriptor 109: ==233013== ==233013== ==233013== Open file descriptor 106: ==233013== ==233013== ==233013== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainWithBathProblem_valgrind.txt ==233013== ==233013== ==233013== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==233013== ==233013== ==233013== ==233013== HEAP SUMMARY: ==233013== in use at exit: 1,876,341 bytes in 11,744 blocks ==233013== total heap usage: 1,406,010 allocs, 1,394,266 frees, 2,183,130,544 bytes allocated ==233013== ==233013== LEAK SUMMARY: ==233013== definitely lost: 0 bytes in 0 blocks ==233013== indirectly lost: 0 bytes in 0 blocks ==233013== possibly lost: 0 bytes in 0 blocks ==233013== still reachable: 24 bytes in 2 blocks ==233013== suppressed: 1,876,317 bytes in 11,742 blocks ==233013== Reachable blocks (those to which a pointer was found) are not shown. ==233013== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==233013== ==233013== For lists of detected and suppressed errors, rerun with: -s ==233013== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 85 from 50)