==217693== Memcheck, a memory error detector ==217693== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==217693== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==217693== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCell -malloc_debug -malloc_dump -memory_info ==217693== Parent PID: 216543 ==217693== ==217693== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==217693== This could cause spurious value errors to appear. ==217693== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==217693== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==217693== This could cause spurious value errors to appear. ==217693== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==217693== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==217693== This could cause spurious value errors to appear. ==217693== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==217693== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==217693== This could cause spurious value errors to appear. ==217693== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==217693== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==217693== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==217693== Warning: set address range perms: large range [0x1bf1f000, 0x3bf1e000) (noaccess) ==217693== ==217693== FILE DESCRIPTORS: 14 open (3 std) at exit. ==217693== Open file descriptor 23: /dev/nvidia0 ==217693== at 0xE419764: open (open64.c:41) ==217693== by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AFCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1B066B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AF54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AF5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AFD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x12A38023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217693== by 0x12A38FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217693== by 0x18A3446A: ??? ==217693== by 0x1308BF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217693== by 0x13067B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217693== by 0x13018CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217693== by 0x12F45EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217693== by 0x18A22F03: ??? ==217693== by 0x12F7A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217693== by 0xE069418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217693== by 0xE002D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217693== by 0xCCCED38: PetscInitialize (pinit.c:924) ==217693== by 0xCBA4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217693== by 0xCBA41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217693== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==217693== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217693== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217693== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217693== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217693== by 0x1222F5: main (TestCell.cpp:19) ==217693== ==217693== Open file descriptor 22: /dev/nvidia0 ==217693== at 0xE419764: open (open64.c:41) ==217693== by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AFCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AF5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AF5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AFD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x12A38023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217693== by 0x12A38FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217693== by 0x18A3446A: ??? ==217693== by 0x1308BF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217693== by 0x13067B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217693== by 0x13018CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217693== by 0x12F45EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217693== by 0x18A22F03: ??? ==217693== by 0x12F7A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217693== by 0xE069418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217693== by 0xE002D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217693== by 0xCCCED38: PetscInitialize (pinit.c:924) ==217693== by 0xCBA4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217693== by 0xCBA41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217693== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==217693== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217693== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217693== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217693== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217693== by 0x1222F5: main (TestCell.cpp:19) ==217693== ==217693== Open file descriptor 21: /dev/nvidia0 ==217693== at 0xE419764: open (open64.c:41) ==217693== by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AFCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AF5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AFD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x12A38023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217693== by 0x12A38FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217693== by 0x18A3446A: ??? ==217693== by 0x1308BF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217693== by 0x13067B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217693== by 0x13018CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217693== by 0x12F45EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217693== by 0x18A22F03: ??? ==217693== by 0x12F7A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217693== by 0xE069418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217693== by 0xE002D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217693== by 0xCCCED38: PetscInitialize (pinit.c:924) ==217693== by 0xCBA4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217693== by 0xCBA41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217693== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==217693== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217693== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217693== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217693== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217693== by 0x1222F5: main (TestCell.cpp:19) ==217693== ==217693== Open file descriptor 20: /dev/nvidia-uvm ==217693== at 0xE419764: open (open64.c:41) ==217693== by 0x1AE36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AE1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x12A38023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217693== by 0x12A38FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217693== by 0x18A3446A: ??? ==217693== by 0x1308BF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217693== by 0x13067B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217693== by 0x13018CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217693== by 0x12F45EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217693== by 0x18A22F03: ??? ==217693== by 0x12F7A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217693== by 0xE069418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217693== by 0xE002D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217693== by 0xCCCED38: PetscInitialize (pinit.c:924) ==217693== by 0xCBA4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217693== by 0xCBA41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217693== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==217693== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217693== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217693== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217693== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217693== by 0x1222F5: main (TestCell.cpp:19) ==217693== ==217693== Open file descriptor 19: /dev/nvidiactl ==217693== at 0xE419764: open (open64.c:41) ==217693== by 0x1AFCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AFD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AE1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217693== by 0x12A38023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217693== by 0x12A38FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217693== by 0x18A3446A: ??? ==217693== by 0x1308BF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217693== by 0x13067B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217693== by 0x13018CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217693== by 0x12F45EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217693== by 0x18A22F03: ??? ==217693== by 0x12F7A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217693== by 0xE069418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217693== by 0xE002D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217693== by 0xCCCED38: PetscInitialize (pinit.c:924) ==217693== by 0xCBA4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217693== by 0xCBA41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217693== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==217693== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217693== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217693== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217693== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217693== by 0x1222F5: main (TestCell.cpp:19) ==217693== ==217693== Open file descriptor 12: ==217693== at 0xE41A22D: pipe (pipe.c:29) ==217693== by 0x18A2207D: ??? ==217693== by 0x12F7A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217693== by 0xE069418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217693== by 0xE002D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217693== by 0xCCCED38: PetscInitialize (pinit.c:924) ==217693== by 0xCBA4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217693== by 0xCBA41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217693== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==217693== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217693== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217693== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217693== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217693== by 0x1222F5: main (TestCell.cpp:19) ==217693== ==217693== Open file descriptor 8: /dev/shm/open_mpi.0000 ==217693== at 0xE41EBCC: __open_nocancel (open64_nocancel.c:39) ==217693== by 0xE3A2C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==217693== by 0xDF58822: ??? ==217693== by 0xDF5896F: ??? ==217693== by 0x1301F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217693== by 0x1301F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217693== by 0x12FD5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217693== by 0x12F7A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217693== by 0xE069418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217693== by 0xE002D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217693== by 0xCCCED38: PetscInitialize (pinit.c:924) ==217693== by 0xCBA4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217693== by 0xCBA41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217693== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==217693== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217693== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217693== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217693== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217693== by 0x1222F5: main (TestCell.cpp:19) ==217693== ==217693== Open file descriptor 109: ==217693== ==217693== ==217693== Open file descriptor 106: ==217693== ==217693== ==217693== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCell_valgrind.txt ==217693== ==217693== ==217693== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==217693== ==217693== ==217693== ==217693== HEAP SUMMARY: ==217693== in use at exit: 1,875,959 bytes in 11,736 blocks ==217693== total heap usage: 5,191,512 allocs, 5,179,776 frees, 2,013,770,846 bytes allocated ==217693== ==217693== LEAK SUMMARY: ==217693== definitely lost: 0 bytes in 0 blocks ==217693== indirectly lost: 0 bytes in 0 blocks ==217693== possibly lost: 0 bytes in 0 blocks ==217693== still reachable: 184 bytes in 4 blocks ==217693== suppressed: 1,875,775 bytes in 11,732 blocks ==217693== Reachable blocks (those to which a pointer was found) are not shown. ==217693== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==217693== ==217693== For lists of detected and suppressed errors, rerun with: -s ==217693== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 52 from 52)