==217054== Memcheck, a memory error detector
==217054== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==217054== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==217054== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info
==217054== Parent PID: 216543
==217054== 
==217054== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints.
==217054==    This could cause spurious value errors to appear.
==217054==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==217054== Warning: noted but unhandled ioctl 0x27 with no size/direction hints.
==217054==    This could cause spurious value errors to appear.
==217054==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==217054== Warning: noted but unhandled ioctl 0x25 with no size/direction hints.
==217054==    This could cause spurious value errors to appear.
==217054==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==217054== Warning: noted but unhandled ioctl 0x17 with no size/direction hints.
==217054==    This could cause spurious value errors to appear.
==217054==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==217054== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess)
==217054== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess)
==217054== Warning: set address range perms: large range [0x1311f000, 0x3311e000) (noaccess)
==217054== 
==217054== FILE DESCRIPTORS: 14 open (3 std) at exit.
==217054== Open file descriptor 23: /dev/nvidia0
==217054==    at 0x7E64764: open (open64.c:41)
==217054==    by 0x121CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x121CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x12266B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x12154026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x1215D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x121D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x1225FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x1201A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x11F648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0xB137023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==217054==    by 0xB137FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==217054==    by 0xFD4246A: ???
==217054==    by 0xB788F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==217054==    by 0xB764B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==217054==    by 0xB715CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==217054==    by 0xB642EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==217054==    by 0xFD30F03: ???
==217054==    by 0xB6774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==217054==    by 0x7688418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==217054==    by 0x7621D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==217054==    by 0x62EBD38: PetscInitialize (pinit.c:924)
==217054==    by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==217054==    by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==217054==    by 0x11C6C1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==217054==    by 0x11776D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==217054==    by 0x11A4A8: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==217054==    by 0x11A348: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==217054==    by 0x11A9DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==217054==    by 0x115B95: main (TestHoneycombMeshGenerator.cpp:19)
==217054== 
==217054== Open file descriptor 22: /dev/nvidia0
==217054==    at 0x7E64764: open (open64.c:41)
==217054==    by 0x121CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x121CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x1215407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x1215D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x121D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x1225FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x1201A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x11F648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0xB137023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==217054==    by 0xB137FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==217054==    by 0xFD4246A: ???
==217054==    by 0xB788F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==217054==    by 0xB764B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==217054==    by 0xB715CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==217054==    by 0xB642EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==217054==    by 0xFD30F03: ???
==217054==    by 0xB6774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==217054==    by 0x7688418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==217054==    by 0x7621D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==217054==    by 0x62EBD38: PetscInitialize (pinit.c:924)
==217054==    by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==217054==    by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==217054==    by 0x11C6C1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==217054==    by 0x11776D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==217054==    by 0x11A4A8: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==217054==    by 0x11A348: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==217054==    by 0x11A9DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==217054==    by 0x115B95: main (TestHoneycombMeshGenerator.cpp:19)
==217054== 
==217054== Open file descriptor 21: /dev/nvidia0
==217054==    at 0x7E64764: open (open64.c:41)
==217054==    by 0x121CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x121CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x1215DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x121D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x1225FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x1201A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x11F648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0xB137023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==217054==    by 0xB137FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==217054==    by 0xFD4246A: ???
==217054==    by 0xB788F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==217054==    by 0xB764B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==217054==    by 0xB715CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==217054==    by 0xB642EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==217054==    by 0xFD30F03: ???
==217054==    by 0xB6774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==217054==    by 0x7688418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==217054==    by 0x7621D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==217054==    by 0x62EBD38: PetscInitialize (pinit.c:924)
==217054==    by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==217054==    by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==217054==    by 0x11C6C1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==217054==    by 0x11776D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==217054==    by 0x11A4A8: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==217054==    by 0x11A348: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==217054==    by 0x11A9DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==217054==    by 0x115B95: main (TestHoneycombMeshGenerator.cpp:19)
==217054== 
==217054== Open file descriptor 20: /dev/nvidia-uvm
==217054==    at 0x7E64764: open (open64.c:41)
==217054==    by 0x12036F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x1201A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x11F648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0xB137023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==217054==    by 0xB137FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==217054==    by 0xFD4246A: ???
==217054==    by 0xB788F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==217054==    by 0xB764B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==217054==    by 0xB715CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==217054==    by 0xB642EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==217054==    by 0xFD30F03: ???
==217054==    by 0xB6774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==217054==    by 0x7688418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==217054==    by 0x7621D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==217054==    by 0x62EBD38: PetscInitialize (pinit.c:924)
==217054==    by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==217054==    by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==217054==    by 0x11C6C1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==217054==    by 0x11776D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==217054==    by 0x11A4A8: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==217054==    by 0x11A348: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==217054==    by 0x11A9DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==217054==    by 0x115B95: main (TestHoneycombMeshGenerator.cpp:19)
==217054== 
==217054== Open file descriptor 19: /dev/nvidiactl
==217054==    at 0x7E64764: open (open64.c:41)
==217054==    by 0x121CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x121D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x1201A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0x11F648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==217054==    by 0xB137023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==217054==    by 0xB137FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==217054==    by 0xFD4246A: ???
==217054==    by 0xB788F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==217054==    by 0xB764B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==217054==    by 0xB715CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==217054==    by 0xB642EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==217054==    by 0xFD30F03: ???
==217054==    by 0xB6774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==217054==    by 0x7688418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==217054==    by 0x7621D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==217054==    by 0x62EBD38: PetscInitialize (pinit.c:924)
==217054==    by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==217054==    by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==217054==    by 0x11C6C1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==217054==    by 0x11776D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==217054==    by 0x11A4A8: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==217054==    by 0x11A348: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==217054==    by 0x11A9DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==217054==    by 0x115B95: main (TestHoneycombMeshGenerator.cpp:19)
==217054== 
==217054== Open file descriptor 12:
==217054==    at 0x7E6522D: pipe (pipe.c:29)
==217054==    by 0xFD3007D: ???
==217054==    by 0xB6774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==217054==    by 0x7688418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==217054==    by 0x7621D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==217054==    by 0x62EBD38: PetscInitialize (pinit.c:924)
==217054==    by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==217054==    by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==217054==    by 0x11C6C1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==217054==    by 0x11776D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==217054==    by 0x11A4A8: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==217054==    by 0x11A348: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==217054==    by 0x11A9DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==217054==    by 0x115B95: main (TestHoneycombMeshGenerator.cpp:19)
==217054== 
==217054== Open file descriptor 8: /dev/shm/open_mpi.0000
==217054==    at 0x7E69BCC: __open_nocancel (open64_nocancel.c:39)
==217054==    by 0x7DEDC4F: shm_open@@GLIBC_2.34 (shm_open.c:40)
==217054==    by 0x7575822: ???
==217054==    by 0x757596F: ???
==217054==    by 0xB71C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==217054==    by 0xB71C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==217054==    by 0xB6D2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==217054==    by 0xB6772DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==217054==    by 0x7688418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==217054==    by 0x7621D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==217054==    by 0x62EBD38: PetscInitialize (pinit.c:924)
==217054==    by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==217054==    by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==217054==    by 0x11C6C1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==217054==    by 0x11776D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==217054==    by 0x11A4A8: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==217054==    by 0x11A348: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==217054==    by 0x11A9DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==217054==    by 0x115B95: main (TestHoneycombMeshGenerator.cpp:19)
==217054== 
==217054== Open file descriptor 109:
==217054==    <inherited from parent>
==217054== 
==217054== Open file descriptor 106:
==217054==    <inherited from parent>
==217054== 
==217054== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHoneycombMeshGenerator_valgrind.txt
==217054==    <inherited from parent>
==217054== 
==217054== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==217054==    <inherited from parent>
==217054== 
==217054== 
==217054== HEAP SUMMARY:
==217054==     in use at exit: 1,878,213 bytes in 11,739 blocks
==217054==   total heap usage: 1,208,901 allocs, 1,197,162 frees, 1,573,643,661 bytes allocated
==217054== 
==217054== LEAK SUMMARY:
==217054==    definitely lost: 0 bytes in 0 blocks
==217054==    indirectly lost: 0 bytes in 0 blocks
==217054==      possibly lost: 0 bytes in 0 blocks
==217054==    still reachable: 2,576 bytes in 3 blocks
==217054==         suppressed: 1,875,637 bytes in 11,736 blocks
==217054== Reachable blocks (those to which a pointer was found) are not shown.
==217054== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==217054== 
==217054== For lists of detected and suppressed errors, rerun with: -s
==217054== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 50 from 50)