==217635== Memcheck, a memory error detector ==217635== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==217635== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==217635== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMoreMechanics -malloc_debug -malloc_dump -memory_info ==217635== Parent PID: 216543 ==217635== ==217635== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==217635== This could cause spurious value errors to appear. ==217635== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==217635== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==217635== This could cause spurious value errors to appear. ==217635== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==217635== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==217635== This could cause spurious value errors to appear. ==217635== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==217635== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==217635== This could cause spurious value errors to appear. ==217635== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==217635== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==217635== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==217635== Warning: set address range perms: large range [0x1371f000, 0x3371e000) (noaccess) ==217635== ==217635== FILE DESCRIPTORS: 14 open (3 std) at exit. ==217635== Open file descriptor 23: /dev/nvidia0 ==217635== at 0x82DB764: open (open64.c:41) ==217635== by 0x127CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x127CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x12866B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x12754026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x1275D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x127D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x1285FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x1261A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x125648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x8DF5023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217635== by 0x8DF5FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217635== by 0x102D746A: ??? ==217635== by 0xC270F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217635== by 0xC24CB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217635== by 0xC1FDCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217635== by 0xC12AEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217635== by 0x102C5F03: ??? ==217635== by 0xC15F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217635== by 0x8942418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217635== by 0x88DBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217635== by 0x6899D38: PetscInitialize (pinit.c:924) ==217635== by 0x6771153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217635== by 0x67711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217635== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==217635== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217635== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217635== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217635== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217635== by 0x135775: main (TestMoreMechanics.cpp:19) ==217635== ==217635== Open file descriptor 22: /dev/nvidia0 ==217635== at 0x82DB764: open (open64.c:41) ==217635== by 0x127CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x127CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x1275407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x1275D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x127D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x1285FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x1261A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x125648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x8DF5023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217635== by 0x8DF5FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217635== by 0x102D746A: ??? ==217635== by 0xC270F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217635== by 0xC24CB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217635== by 0xC1FDCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217635== by 0xC12AEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217635== by 0x102C5F03: ??? ==217635== by 0xC15F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217635== by 0x8942418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217635== by 0x88DBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217635== by 0x6899D38: PetscInitialize (pinit.c:924) ==217635== by 0x6771153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217635== by 0x67711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217635== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==217635== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217635== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217635== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217635== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217635== by 0x135775: main (TestMoreMechanics.cpp:19) ==217635== ==217635== Open file descriptor 21: /dev/nvidia0 ==217635== at 0x82DB764: open (open64.c:41) ==217635== by 0x127CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x127CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x1275DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x127D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x1285FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x1261A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x125648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x8DF5023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217635== by 0x8DF5FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217635== by 0x102D746A: ??? ==217635== by 0xC270F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217635== by 0xC24CB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217635== by 0xC1FDCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217635== by 0xC12AEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217635== by 0x102C5F03: ??? ==217635== by 0xC15F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217635== by 0x8942418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217635== by 0x88DBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217635== by 0x6899D38: PetscInitialize (pinit.c:924) ==217635== by 0x6771153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217635== by 0x67711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217635== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==217635== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217635== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217635== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217635== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217635== by 0x135775: main (TestMoreMechanics.cpp:19) ==217635== ==217635== Open file descriptor 20: /dev/nvidia-uvm ==217635== at 0x82DB764: open (open64.c:41) ==217635== by 0x12636F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x1261A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x125648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x8DF5023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217635== by 0x8DF5FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217635== by 0x102D746A: ??? ==217635== by 0xC270F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217635== by 0xC24CB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217635== by 0xC1FDCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217635== by 0xC12AEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217635== by 0x102C5F03: ??? ==217635== by 0xC15F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217635== by 0x8942418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217635== by 0x88DBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217635== by 0x6899D38: PetscInitialize (pinit.c:924) ==217635== by 0x6771153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217635== by 0x67711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217635== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==217635== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217635== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217635== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217635== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217635== by 0x135775: main (TestMoreMechanics.cpp:19) ==217635== ==217635== Open file descriptor 19: /dev/nvidiactl ==217635== at 0x82DB764: open (open64.c:41) ==217635== by 0x127CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x127D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x1261A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x125648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217635== by 0x8DF5023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217635== by 0x8DF5FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217635== by 0x102D746A: ??? ==217635== by 0xC270F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217635== by 0xC24CB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217635== by 0xC1FDCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217635== by 0xC12AEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217635== by 0x102C5F03: ??? ==217635== by 0xC15F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217635== by 0x8942418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217635== by 0x88DBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217635== by 0x6899D38: PetscInitialize (pinit.c:924) ==217635== by 0x6771153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217635== by 0x67711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217635== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==217635== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217635== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217635== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217635== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217635== by 0x135775: main (TestMoreMechanics.cpp:19) ==217635== ==217635== Open file descriptor 12: ==217635== at 0x82DC22D: pipe (pipe.c:29) ==217635== by 0x102C507D: ??? ==217635== by 0xC15F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217635== by 0x8942418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217635== by 0x88DBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217635== by 0x6899D38: PetscInitialize (pinit.c:924) ==217635== by 0x6771153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217635== by 0x67711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217635== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==217635== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217635== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217635== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217635== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217635== by 0x135775: main (TestMoreMechanics.cpp:19) ==217635== ==217635== Open file descriptor 8: /dev/shm/open_mpi.0000 ==217635== at 0x82E0BCC: __open_nocancel (open64_nocancel.c:39) ==217635== by 0x8264C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==217635== by 0x7B23822: ??? ==217635== by 0x7B2396F: ??? ==217635== by 0xC2046DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217635== by 0xC204938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217635== by 0xC1BA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217635== by 0xC15F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217635== by 0x8942418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217635== by 0x88DBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217635== by 0x6899D38: PetscInitialize (pinit.c:924) ==217635== by 0x6771153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217635== by 0x67711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217635== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==217635== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217635== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217635== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217635== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217635== by 0x135775: main (TestMoreMechanics.cpp:19) ==217635== ==217635== Open file descriptor 109: ==217635== ==217635== ==217635== Open file descriptor 106: ==217635== ==217635== ==217635== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMoreMechanics_valgrind.txt ==217635== ==217635== ==217635== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==217635== ==217635== ==217635== ==217635== HEAP SUMMARY: ==217635== in use at exit: 1,875,689 bytes in 11,734 blocks ==217635== total heap usage: 384,747 allocs, 373,013 frees, 1,634,755,249 bytes allocated ==217635== ==217635== LEAK SUMMARY: ==217635== definitely lost: 0 bytes in 0 blocks ==217635== indirectly lost: 0 bytes in 0 blocks ==217635== possibly lost: 0 bytes in 0 blocks ==217635== still reachable: 24 bytes in 2 blocks ==217635== suppressed: 1,875,665 bytes in 11,732 blocks ==217635== Reachable blocks (those to which a pointer was found) are not shown. ==217635== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==217635== ==217635== For lists of detected and suppressed errors, rerun with: -s ==217635== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 46)