==217636== Memcheck, a memory error detector ==217636== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==217636== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==217636== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestNonlinearElasticityTools -malloc_debug -malloc_dump -memory_info ==217636== Parent PID: 216543 ==217636== ==217636== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==217636== This could cause spurious value errors to appear. ==217636== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==217636== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==217636== This could cause spurious value errors to appear. ==217636== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==217636== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==217636== This could cause spurious value errors to appear. ==217636== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==217636== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==217636== This could cause spurious value errors to appear. ==217636== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==217636== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==217636== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==217636== Warning: set address range perms: large range [0x1371f000, 0x3371e000) (noaccess) ==217636== ==217636== FILE DESCRIPTORS: 14 open (3 std) at exit. ==217636== Open file descriptor 23: /dev/nvidia0 ==217636== at 0x6A48764: open (open64.c:41) ==217636== by 0x127CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x127CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x12866B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x12754026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x1275D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x127D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x1285FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x1261A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x125648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0xB711023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217636== by 0xB711FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217636== by 0x102D746A: ??? ==217636== by 0xBD66F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217636== by 0xBD42B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217636== by 0xBCF3CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217636== by 0xBC1EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217636== by 0x102C5F03: ??? ==217636== by 0xBC534CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217636== by 0x851A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217636== by 0x84B3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217636== by 0x707FD38: PetscInitialize (pinit.c:924) ==217636== by 0x6345153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217636== by 0x63451A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217636== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==217636== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217636== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217636== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217636== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217636== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==217636== ==217636== Open file descriptor 22: /dev/nvidia0 ==217636== at 0x6A48764: open (open64.c:41) ==217636== by 0x127CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x127CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x1275407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x1275D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x127D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x1285FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x1261A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x125648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0xB711023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217636== by 0xB711FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217636== by 0x102D746A: ??? ==217636== by 0xBD66F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217636== by 0xBD42B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217636== by 0xBCF3CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217636== by 0xBC1EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217636== by 0x102C5F03: ??? ==217636== by 0xBC534CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217636== by 0x851A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217636== by 0x84B3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217636== by 0x707FD38: PetscInitialize (pinit.c:924) ==217636== by 0x6345153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217636== by 0x63451A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217636== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==217636== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217636== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217636== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217636== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217636== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==217636== ==217636== Open file descriptor 21: /dev/nvidia0 ==217636== at 0x6A48764: open (open64.c:41) ==217636== by 0x127CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x127CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x1275DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x127D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x1285FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x1261A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x125648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0xB711023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217636== by 0xB711FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217636== by 0x102D746A: ??? ==217636== by 0xBD66F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217636== by 0xBD42B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217636== by 0xBCF3CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217636== by 0xBC1EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217636== by 0x102C5F03: ??? ==217636== by 0xBC534CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217636== by 0x851A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217636== by 0x84B3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217636== by 0x707FD38: PetscInitialize (pinit.c:924) ==217636== by 0x6345153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217636== by 0x63451A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217636== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==217636== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217636== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217636== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217636== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217636== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==217636== ==217636== Open file descriptor 20: /dev/nvidia-uvm ==217636== at 0x6A48764: open (open64.c:41) ==217636== by 0x12636F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x1261A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x125648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0xB711023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217636== by 0xB711FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217636== by 0x102D746A: ??? ==217636== by 0xBD66F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217636== by 0xBD42B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217636== by 0xBCF3CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217636== by 0xBC1EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217636== by 0x102C5F03: ??? ==217636== by 0xBC534CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217636== by 0x851A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217636== by 0x84B3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217636== by 0x707FD38: PetscInitialize (pinit.c:924) ==217636== by 0x6345153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217636== by 0x63451A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217636== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==217636== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217636== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217636== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217636== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217636== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==217636== ==217636== Open file descriptor 19: /dev/nvidiactl ==217636== at 0x6A48764: open (open64.c:41) ==217636== by 0x127CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x127D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x1261A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0x125648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==217636== by 0xB711023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217636== by 0xB711FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==217636== by 0x102D746A: ??? ==217636== by 0xBD66F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217636== by 0xBD42B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==217636== by 0xBCF3CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217636== by 0xBC1EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217636== by 0x102C5F03: ??? ==217636== by 0xBC534CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217636== by 0x851A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217636== by 0x84B3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217636== by 0x707FD38: PetscInitialize (pinit.c:924) ==217636== by 0x6345153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217636== by 0x63451A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217636== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==217636== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217636== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217636== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217636== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217636== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==217636== ==217636== Open file descriptor 12: ==217636== at 0x6A4922D: pipe (pipe.c:29) ==217636== by 0x102C507D: ??? ==217636== by 0xBC534CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217636== by 0x851A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217636== by 0x84B3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217636== by 0x707FD38: PetscInitialize (pinit.c:924) ==217636== by 0x6345153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217636== by 0x63451A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217636== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==217636== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217636== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217636== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217636== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217636== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==217636== ==217636== Open file descriptor 8: /dev/shm/open_mpi.0000 ==217636== at 0x6A4DBCC: __open_nocancel (open64_nocancel.c:39) ==217636== by 0x69D1C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==217636== by 0x6379822: ??? ==217636== by 0x637996F: ??? ==217636== by 0xBCFA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217636== by 0xBCFA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217636== by 0xBCB0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==217636== by 0xBC532DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==217636== by 0x851A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217636== by 0x84B3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==217636== by 0x707FD38: PetscInitialize (pinit.c:924) ==217636== by 0x6345153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==217636== by 0x63451A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==217636== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==217636== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==217636== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==217636== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==217636== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==217636== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==217636== ==217636== Open file descriptor 109: ==217636== ==217636== ==217636== Open file descriptor 106: ==217636== ==217636== ==217636== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonlinearElasticityTools_valgrind.txt ==217636== ==217636== ==217636== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==217636== ==217636== ==217636== ==217636== HEAP SUMMARY: ==217636== in use at exit: 1,875,822 bytes in 11,738 blocks ==217636== total heap usage: 66,138 allocs, 54,400 frees, 1,534,078,962 bytes allocated ==217636== ==217636== LEAK SUMMARY: ==217636== definitely lost: 0 bytes in 0 blocks ==217636== indirectly lost: 0 bytes in 0 blocks ==217636== possibly lost: 0 bytes in 0 blocks ==217636== still reachable: 24 bytes in 2 blocks ==217636== suppressed: 1,875,798 bytes in 11,736 blocks ==217636== Reachable blocks (those to which a pointer was found) are not shown. ==217636== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==217636== ==217636== For lists of detected and suppressed errors, rerun with: -s ==217636== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)