==216710== Memcheck, a memory error detector ==216710== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==216710== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==216710== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscSetup -malloc_debug -malloc_dump -memory_info ==216710== Parent PID: 216543 ==216710== ==216710== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==216710== This could cause spurious value errors to appear. ==216710== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==216710== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==216710== This could cause spurious value errors to appear. ==216710== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==216710== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==216710== This could cause spurious value errors to appear. ==216710== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==216710== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==216710== This could cause spurious value errors to appear. ==216710== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==216710== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==216710== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==216710== Warning: set address range perms: large range [0x1011f000, 0x3011e000) (noaccess) ==216710== ==216710== FILE DESCRIPTORS: 14 open (3 std) at exit. ==216710== Open file descriptor 23: /dev/nvidia0 ==216710== at 0x6038764: open (open64.c:41) ==216710== by 0xF1CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF1CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF266B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF154026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF15D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF1D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF25FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF01A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0x8480023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==216710== by 0x8480FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==216710== by 0xAEB646A: ??? ==216710== by 0x8AD3F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==216710== by 0x8AAFB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==216710== by 0x8A60CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==216710== by 0x898DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==216710== by 0xAEA4F03: ??? ==216710== by 0x89C24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==216710== by 0x6275418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==216710== by 0x620ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==216710== by 0x4A22D38: PetscInitialize (pinit.c:924) ==216710== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==216710== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==216710== by 0x113E58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==216710== by 0x10F48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==216710== by 0x111EFA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==216710== by 0x111D9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==216710== by 0x112431: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==216710== by 0x10D8B5: main (TestPetscSetup.cpp:19) ==216710== ==216710== Open file descriptor 22: /dev/nvidia0 ==216710== at 0x6038764: open (open64.c:41) ==216710== by 0xF1CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF1CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF15407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF15D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF1D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF25FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF01A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0x8480023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==216710== by 0x8480FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==216710== by 0xAEB646A: ??? ==216710== by 0x8AD3F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==216710== by 0x8AAFB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==216710== by 0x8A60CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==216710== by 0x898DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==216710== by 0xAEA4F03: ??? ==216710== by 0x89C24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==216710== by 0x6275418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==216710== by 0x620ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==216710== by 0x4A22D38: PetscInitialize (pinit.c:924) ==216710== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==216710== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==216710== by 0x113E58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==216710== by 0x10F48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==216710== by 0x111EFA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==216710== by 0x111D9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==216710== by 0x112431: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==216710== by 0x10D8B5: main (TestPetscSetup.cpp:19) ==216710== ==216710== Open file descriptor 21: /dev/nvidia0 ==216710== at 0x6038764: open (open64.c:41) ==216710== by 0xF1CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF1CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF15DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF1D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF25FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF01A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0x8480023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==216710== by 0x8480FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==216710== by 0xAEB646A: ??? ==216710== by 0x8AD3F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==216710== by 0x8AAFB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==216710== by 0x8A60CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==216710== by 0x898DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==216710== by 0xAEA4F03: ??? ==216710== by 0x89C24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==216710== by 0x6275418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==216710== by 0x620ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==216710== by 0x4A22D38: PetscInitialize (pinit.c:924) ==216710== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==216710== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==216710== by 0x113E58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==216710== by 0x10F48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==216710== by 0x111EFA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==216710== by 0x111D9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==216710== by 0x112431: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==216710== by 0x10D8B5: main (TestPetscSetup.cpp:19) ==216710== ==216710== Open file descriptor 20: /dev/nvidia-uvm ==216710== at 0x6038764: open (open64.c:41) ==216710== by 0xF036F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF01A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0x8480023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==216710== by 0x8480FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==216710== by 0xAEB646A: ??? ==216710== by 0x8AD3F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==216710== by 0x8AAFB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==216710== by 0x8A60CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==216710== by 0x898DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==216710== by 0xAEA4F03: ??? ==216710== by 0x89C24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==216710== by 0x6275418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==216710== by 0x620ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==216710== by 0x4A22D38: PetscInitialize (pinit.c:924) ==216710== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==216710== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==216710== by 0x113E58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==216710== by 0x10F48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==216710== by 0x111EFA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==216710== by 0x111D9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==216710== by 0x112431: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==216710== by 0x10D8B5: main (TestPetscSetup.cpp:19) ==216710== ==216710== Open file descriptor 19: /dev/nvidiactl ==216710== at 0x6038764: open (open64.c:41) ==216710== by 0xF1CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF1D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xF01A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==216710== by 0x8480023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==216710== by 0x8480FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==216710== by 0xAEB646A: ??? ==216710== by 0x8AD3F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==216710== by 0x8AAFB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==216710== by 0x8A60CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==216710== by 0x898DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==216710== by 0xAEA4F03: ??? ==216710== by 0x89C24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==216710== by 0x6275418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==216710== by 0x620ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==216710== by 0x4A22D38: PetscInitialize (pinit.c:924) ==216710== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==216710== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==216710== by 0x113E58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==216710== by 0x10F48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==216710== by 0x111EFA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==216710== by 0x111D9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==216710== by 0x112431: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==216710== by 0x10D8B5: main (TestPetscSetup.cpp:19) ==216710== ==216710== Open file descriptor 12: ==216710== at 0x603922D: pipe (pipe.c:29) ==216710== by 0xAEA407D: ??? ==216710== by 0x89C24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==216710== by 0x6275418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==216710== by 0x620ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==216710== by 0x4A22D38: PetscInitialize (pinit.c:924) ==216710== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==216710== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==216710== by 0x113E58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==216710== by 0x10F48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==216710== by 0x111EFA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==216710== by 0x111D9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==216710== by 0x112431: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==216710== by 0x10D8B5: main (TestPetscSetup.cpp:19) ==216710== ==216710== Open file descriptor 8: /dev/shm/open_mpi.0000 ==216710== at 0x603DBCC: __open_nocancel (open64_nocancel.c:39) ==216710== by 0x5FC1C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==216710== by 0x5CAC822: ??? ==216710== by 0x5CAC96F: ??? ==216710== by 0x8A676DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==216710== by 0x8A67938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==216710== by 0x8A1D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==216710== by 0x89C22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==216710== by 0x6275418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==216710== by 0x620ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==216710== by 0x4A22D38: PetscInitialize (pinit.c:924) ==216710== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==216710== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==216710== by 0x113E58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==216710== by 0x10F48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==216710== by 0x111EFA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==216710== by 0x111D9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==216710== by 0x112431: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==216710== by 0x10D8B5: main (TestPetscSetup.cpp:19) ==216710== ==216710== Open file descriptor 109: ==216710== ==216710== ==216710== Open file descriptor 106: ==216710== ==216710== ==216710== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscSetup_valgrind.txt ==216710== ==216710== ==216710== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==216710== ==216710== ==216710== ==216710== HEAP SUMMARY: ==216710== in use at exit: 1,875,299 bytes in 11,738 blocks ==216710== total heap usage: 53,781 allocs, 42,043 frees, 1,532,844,403 bytes allocated ==216710== ==216710== LEAK SUMMARY: ==216710== definitely lost: 0 bytes in 0 blocks ==216710== indirectly lost: 0 bytes in 0 blocks ==216710== possibly lost: 0 bytes in 0 blocks ==216710== still reachable: 24 bytes in 2 blocks ==216710== suppressed: 1,875,275 bytes in 11,736 blocks ==216710== Reachable blocks (those to which a pointer was found) are not shown. ==216710== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==216710== ==216710== For lists of detected and suppressed errors, rerun with: -s ==216710== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 50 from 50)