==35009== Memcheck, a memory error detector ==35009== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==35009== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==35009== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==35009== Parent PID: 33132 ==35009== ==35009== ==35009== FILE DESCRIPTORS: 9 open (3 std) at exit. ==35009== Open file descriptor 12: ==35009== at 0xE94B22D: pipe (pipe.c:29) ==35009== by 0x18AE307D: ??? ==35009== by 0x140804CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==35009== by 0x105A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35009== by 0x10541D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35009== by 0xF236D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==35009== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==35009== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==35009== by 0x2135CC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==35009== by 0x20ADD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==35009== by 0x20E9C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==35009== by 0x20E864: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==35009== by 0x20EEFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==35009== by 0x2091F5: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) ==35009== ==35009== Open file descriptor 8: /dev/shm/open_mpi.0000 ==35009== at 0xE94FBCC: __open_nocancel (open64_nocancel.c:39) ==35009== by 0xE8D3C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==35009== by 0xE49F822: ??? ==35009== by 0xE49F96F: ??? ==35009== by 0x141256DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35009== by 0x14125938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35009== by 0x140DB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35009== by 0x140802DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==35009== by 0x105A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35009== by 0x10541D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35009== by 0xF236D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==35009== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==35009== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==35009== by 0x2135CC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==35009== by 0x20ADD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==35009== by 0x20E9C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==35009== by 0x20E864: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==35009== by 0x20EEFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==35009== by 0x2091F5: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) ==35009== ==35009== Open file descriptor 109: ==35009== ==35009== ==35009== Open file descriptor 106: ==35009== ==35009== ==35009== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt ==35009== ==35009== ==35009== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==35009== ==35009== ==35009== ==35009== HEAP SUMMARY: ==35009== in use at exit: 857,989 bytes in 12,110 blocks ==35009== total heap usage: 16,534,189 allocs, 16,522,079 frees, 30,121,276,408 bytes allocated ==35009== ==35009== LEAK SUMMARY: ==35009== definitely lost: 0 bytes in 0 blocks ==35009== indirectly lost: 0 bytes in 0 blocks ==35009== possibly lost: 0 bytes in 0 blocks ==35009== still reachable: 88 bytes in 4 blocks ==35009== suppressed: 857,901 bytes in 12,106 blocks ==35009== Reachable blocks (those to which a pointer was found) are not shown. ==35009== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==35009== ==35009== For lists of detected and suppressed errors, rerun with: -s ==35009== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)