==35209== Memcheck, a memory error detector ==35209== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==35209== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==35209== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==35209== Parent PID: 33132 ==35209== ==35209== ==35209== FILE DESCRIPTORS: 9 open (3 std) at exit. ==35209== Open file descriptor 12: ==35209== at 0xF10E22D: pipe (pipe.c:29) ==35209== by 0x18AE407D: ??? ==35209== by 0x141F44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==35209== by 0x10D69418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35209== by 0x10D02D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35209== by 0xF9F9D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==35209== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==35209== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==35209== by 0x1D33E2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==35209== by 0x1CCD79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==35209== by 0x1D04B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==35209== by 0x1D0350: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==35209== by 0x1D09E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==35209== by 0x1CB195: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==35209== ==35209== Open file descriptor 8: /dev/shm/open_mpi.0000 ==35209== at 0xF112BCC: __open_nocancel (open64_nocancel.c:39) ==35209== by 0xF096C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==35209== by 0xE49F822: ??? ==35209== by 0xE49F96F: ??? ==35209== by 0x142996DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35209== by 0x14299938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35209== by 0x1424F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35209== by 0x141F42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==35209== by 0x10D69418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35209== by 0x10D02D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35209== by 0xF9F9D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==35209== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==35209== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==35209== by 0x1D33E2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==35209== by 0x1CCD79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==35209== by 0x1D04B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==35209== by 0x1D0350: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==35209== by 0x1D09E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==35209== by 0x1CB195: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==35209== ==35209== Open file descriptor 109: ==35209== ==35209== ==35209== Open file descriptor 106: ==35209== ==35209== ==35209== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==35209== ==35209== ==35209== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==35209== ==35209== ==35209== ==35209== HEAP SUMMARY: ==35209== in use at exit: 857,957 bytes in 12,109 blocks ==35209== total heap usage: 6,555,875 allocs, 6,543,766 frees, 8,227,939,076 bytes allocated ==35209== ==35209== LEAK SUMMARY: ==35209== definitely lost: 0 bytes in 0 blocks ==35209== indirectly lost: 0 bytes in 0 blocks ==35209== possibly lost: 0 bytes in 0 blocks ==35209== still reachable: 56 bytes in 3 blocks ==35209== suppressed: 857,901 bytes in 12,106 blocks ==35209== Reachable blocks (those to which a pointer was found) are not shown. ==35209== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==35209== ==35209== For lists of detected and suppressed errors, rerun with: -s ==35209== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)