==42287== Memcheck, a memory error detector ==42287== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==42287== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==42287== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==42287== Parent PID: 33132 ==42287== ==42287== ==42287== FILE DESCRIPTORS: 9 open (3 std) at exit. ==42287== Open file descriptor 12: ==42287== at 0x1159822D: pipe (pipe.c:29) ==42287== by 0x1A7A207D: ??? ==42287== by 0x158F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==42287== by 0x111E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42287== by 0x1117ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42287== by 0xFE52D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==42287== by 0xFD2A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==42287== by 0xFD2A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==42287== by 0x123DF1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==42287== by 0x11F6D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==42287== by 0x1218D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==42287== by 0x1217D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==42287== by 0x121DE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==42287== by 0x11DED5: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==42287== ==42287== Open file descriptor 8: /dev/shm/open_mpi.0000 ==42287== at 0x1159CBCC: __open_nocancel (open64_nocancel.c:39) ==42287== by 0x11520C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==42287== by 0x110DC822: ??? ==42287== by 0x110DC96F: ??? ==42287== by 0x159986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==42287== by 0x15998938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==42287== by 0x1594E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==42287== by 0x158F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==42287== by 0x111E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42287== by 0x1117ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42287== by 0xFE52D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==42287== by 0xFD2A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==42287== by 0xFD2A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==42287== by 0x123DF1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==42287== by 0x11F6D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==42287== by 0x1218D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==42287== by 0x1217D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==42287== by 0x121DE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==42287== by 0x11DED5: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==42287== ==42287== Open file descriptor 109: ==42287== ==42287== ==42287== Open file descriptor 106: ==42287== ==42287== ==42287== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==42287== ==42287== ==42287== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==42287== ==42287== ==42287== ==42287== HEAP SUMMARY: ==42287== in use at exit: 857,973 bytes in 12,109 blocks ==42287== total heap usage: 16,194,337 allocs, 16,182,228 frees, 3,034,356,815 bytes allocated ==42287== ==42287== LEAK SUMMARY: ==42287== definitely lost: 0 bytes in 0 blocks ==42287== indirectly lost: 0 bytes in 0 blocks ==42287== possibly lost: 0 bytes in 0 blocks ==42287== still reachable: 56 bytes in 3 blocks ==42287== suppressed: 857,917 bytes in 12,106 blocks ==42287== Reachable blocks (those to which a pointer was found) are not shown. ==42287== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==42287== ==42287== For lists of detected and suppressed errors, rerun with: -s ==42287== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)