==41913== Memcheck, a memory error detector ==41913== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41913== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41913== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==41913== Parent PID: 33132 ==41913== ==41913== ==41913== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41913== Open file descriptor 12: ==41913== at 0xEBBE22D: pipe (pipe.c:29) ==41913== by 0x18AE107D: ??? ==41913== by 0x140844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41913== by 0x104BF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41913== by 0x10458D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41913== by 0xF14FD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==41913== by 0xE807153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41913== by 0xE8071A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41913== by 0x11C9B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41913== by 0x1182D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41913== by 0x11A55A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41913== by 0x11A455: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41913== by 0x11AA69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41913== by 0x116AD5: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==41913== ==41913== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41913== at 0xEBC2BCC: __open_nocancel (open64_nocancel.c:39) ==41913== by 0xEB46C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41913== by 0xE83B822: ??? ==41913== by 0xE83B96F: ??? ==41913== by 0x141296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41913== by 0x14129938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41913== by 0x140DF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41913== by 0x140842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41913== by 0x104BF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41913== by 0x10458D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41913== by 0xF14FD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==41913== by 0xE807153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41913== by 0xE8071A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41913== by 0x11C9B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41913== by 0x1182D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41913== by 0x11A55A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41913== by 0x11A455: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41913== by 0x11AA69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41913== by 0x116AD5: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==41913== ==41913== Open file descriptor 109: ==41913== ==41913== ==41913== Open file descriptor 106: ==41913== ==41913== ==41913== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==41913== ==41913== ==41913== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41913== ==41913== ==41913== ==41913== HEAP SUMMARY: ==41913== in use at exit: 857,957 bytes in 12,109 blocks ==41913== total heap usage: 1,817,881 allocs, 1,805,772 frees, 1,867,330,428 bytes allocated ==41913== ==41913== LEAK SUMMARY: ==41913== definitely lost: 0 bytes in 0 blocks ==41913== indirectly lost: 0 bytes in 0 blocks ==41913== possibly lost: 0 bytes in 0 blocks ==41913== still reachable: 56 bytes in 3 blocks ==41913== suppressed: 857,901 bytes in 12,106 blocks ==41913== Reachable blocks (those to which a pointer was found) are not shown. ==41913== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41913== ==41913== For lists of detected and suppressed errors, rerun with: -s ==41913== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)