==293428== Memcheck, a memory error detector ==293428== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==293428== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==293428== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainTissue -malloc_debug -malloc_dump -memory_info ==293428== Parent PID: 277092 ==293428== ==293428== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==293428== This could cause spurious value errors to appear. ==293428== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==293428== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==293428== This could cause spurious value errors to appear. ==293428== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==293428== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==293428== This could cause spurious value errors to appear. ==293428== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==293428== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==293428== This could cause spurious value errors to appear. ==293428== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==293428== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==293428== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==293428== Warning: set address range perms: large range [0x1732e000, 0x3732d000) (noaccess) ==293428== ==293428== FILE DESCRIPTORS: 14 open (3 std) at exit. ==293428== Open file descriptor 23: /dev/nvidia0 ==293428== at 0xB816764: open (open64.c:41) ==293428== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x16466B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x16354026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x163D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0xF219023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==293428== by 0xF219FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==293428== by 0x13FA646A: ??? ==293428== by 0xF8B7F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==293428== by 0xF893B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==293428== by 0xF844CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==293428== by 0xF771EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==293428== by 0x13F94F03: ??? ==293428== by 0xF7A64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==293428== by 0xBB93418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293428== by 0xBB2CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293428== by 0x9ECCD38: PetscInitialize (pinit.c:924) ==293428== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==293428== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==293428== by 0x13BB6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==293428== by 0x136223: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==293428== by 0x1389FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==293428== by 0x1388F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==293428== by 0x138F09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==293428== by 0x134A25: main (TestExtendedBidomainTissue.cpp:18) ==293428== ==293428== Open file descriptor 22: /dev/nvidia0 ==293428== at 0xB816764: open (open64.c:41) ==293428== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x1635407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x163D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0xF219023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==293428== by 0xF219FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==293428== by 0x13FA646A: ??? ==293428== by 0xF8B7F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==293428== by 0xF893B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==293428== by 0xF844CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==293428== by 0xF771EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==293428== by 0x13F94F03: ??? ==293428== by 0xF7A64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==293428== by 0xBB93418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293428== by 0xBB2CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293428== by 0x9ECCD38: PetscInitialize (pinit.c:924) ==293428== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==293428== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==293428== by 0x13BB6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==293428== by 0x136223: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==293428== by 0x1389FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==293428== by 0x1388F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==293428== by 0x138F09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==293428== by 0x134A25: main (TestExtendedBidomainTissue.cpp:18) ==293428== ==293428== Open file descriptor 21: /dev/nvidia0 ==293428== at 0xB816764: open (open64.c:41) ==293428== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x163CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x1635DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x163D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0xF219023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==293428== by 0xF219FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==293428== by 0x13FA646A: ??? ==293428== by 0xF8B7F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==293428== by 0xF893B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==293428== by 0xF844CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==293428== by 0xF771EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==293428== by 0x13F94F03: ??? ==293428== by 0xF7A64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==293428== by 0xBB93418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293428== by 0xBB2CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293428== by 0x9ECCD38: PetscInitialize (pinit.c:924) ==293428== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==293428== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==293428== by 0x13BB6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==293428== by 0x136223: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==293428== by 0x1389FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==293428== by 0x1388F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==293428== by 0x138F09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==293428== by 0x134A25: main (TestExtendedBidomainTissue.cpp:18) ==293428== ==293428== Open file descriptor 20: /dev/nvidia-uvm ==293428== at 0xB816764: open (open64.c:41) ==293428== by 0x16236F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x1621A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0xF219023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==293428== by 0xF219FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==293428== by 0x13FA646A: ??? ==293428== by 0xF8B7F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==293428== by 0xF893B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==293428== by 0xF844CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==293428== by 0xF771EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==293428== by 0x13F94F03: ??? ==293428== by 0xF7A64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==293428== by 0xBB93418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293428== by 0xBB2CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293428== by 0x9ECCD38: PetscInitialize (pinit.c:924) ==293428== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==293428== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==293428== by 0x13BB6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==293428== by 0x136223: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==293428== by 0x1389FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==293428== by 0x1388F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==293428== by 0x138F09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==293428== by 0x134A25: main (TestExtendedBidomainTissue.cpp:18) ==293428== ==293428== Open file descriptor 19: /dev/nvidiactl ==293428== at 0xB816764: open (open64.c:41) ==293428== by 0x163CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x163D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x1621A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==293428== by 0xF219023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==293428== by 0xF219FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==293428== by 0x13FA646A: ??? ==293428== by 0xF8B7F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==293428== by 0xF893B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==293428== by 0xF844CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==293428== by 0xF771EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==293428== by 0x13F94F03: ??? ==293428== by 0xF7A64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==293428== by 0xBB93418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293428== by 0xBB2CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293428== by 0x9ECCD38: PetscInitialize (pinit.c:924) ==293428== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==293428== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==293428== by 0x13BB6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==293428== by 0x136223: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==293428== by 0x1389FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==293428== by 0x1388F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==293428== by 0x138F09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==293428== by 0x134A25: main (TestExtendedBidomainTissue.cpp:18) ==293428== ==293428== Open file descriptor 12: ==293428== at 0xB81722D: pipe (pipe.c:29) ==293428== by 0x13F9407D: ??? ==293428== by 0xF7A64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==293428== by 0xBB93418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293428== by 0xBB2CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293428== by 0x9ECCD38: PetscInitialize (pinit.c:924) ==293428== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==293428== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==293428== by 0x13BB6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==293428== by 0x136223: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==293428== by 0x1389FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==293428== by 0x1388F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==293428== by 0x138F09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==293428== by 0x134A25: main (TestExtendedBidomainTissue.cpp:18) ==293428== ==293428== Open file descriptor 8: /dev/shm/open_mpi.0000 ==293428== at 0xB81BBCC: __open_nocancel (open64_nocancel.c:39) ==293428== by 0xB79FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==293428== by 0x9D6B822: ??? ==293428== by 0x9D6B96F: ??? ==293428== by 0xF84B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==293428== by 0xF84B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==293428== by 0xF801922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==293428== by 0xF7A62DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==293428== by 0xBB93418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293428== by 0xBB2CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==293428== by 0x9ECCD38: PetscInitialize (pinit.c:924) ==293428== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==293428== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==293428== by 0x13BB6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==293428== by 0x136223: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==293428== by 0x1389FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==293428== by 0x1388F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==293428== by 0x138F09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==293428== by 0x134A25: main (TestExtendedBidomainTissue.cpp:18) ==293428== ==293428== Open file descriptor 111: ==293428== ==293428== ==293428== Open file descriptor 106: ==293428== ==293428== ==293428== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainTissue_valgrind.txt ==293428== ==293428== ==293428== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==293428== ==293428== ==293428== ==293428== HEAP SUMMARY: ==293428== in use at exit: 1,875,886 bytes in 11,738 blocks ==293428== total heap usage: 129,304 allocs, 117,566 frees, 1,549,006,419 bytes allocated ==293428== ==293428== LEAK SUMMARY: ==293428== definitely lost: 0 bytes in 0 blocks ==293428== indirectly lost: 0 bytes in 0 blocks ==293428== possibly lost: 0 bytes in 0 blocks ==293428== still reachable: 24 bytes in 2 blocks ==293428== suppressed: 1,875,862 bytes in 11,736 blocks ==293428== Reachable blocks (those to which a pointer was found) are not shown. ==293428== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==293428== ==293428== For lists of detected and suppressed errors, rerun with: -s ==293428== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)