==277707== Memcheck, a memory error detector ==277707== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==277707== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==277707== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestHoneycombVertexMeshGenerator -malloc_debug -malloc_dump -memory_info ==277707== Parent PID: 277092 ==277707== ==277707== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==277707== This could cause spurious value errors to appear. ==277707== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==277707== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==277707== This could cause spurious value errors to appear. ==277707== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==277707== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==277707== This could cause spurious value errors to appear. ==277707== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==277707== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==277707== This could cause spurious value errors to appear. ==277707== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==277707== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==277707== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==277707== Warning: set address range perms: large range [0x1311f000, 0x3311e000) (noaccess) ==277707== ==277707== FILE DESCRIPTORS: 14 open (3 std) at exit. ==277707== Open file descriptor 23: /dev/nvidia0 ==277707== at 0x68C8764: open (open64.c:41) ==277707== by 0x121CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x121CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x12266B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x12154026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x1215D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x121D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x1225FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x1201A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x11F648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0xB184023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==277707== by 0xB184FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==277707== by 0xFD4246A: ??? ==277707== by 0xB7D5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==277707== by 0xB7B1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==277707== by 0xB762CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==277707== by 0xB68FEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==277707== by 0xFD30F03: ??? ==277707== by 0xB6C44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==277707== by 0x7F14418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==277707== by 0x7EADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==277707== by 0x6BA4D38: PetscInitialize (pinit.c:924) ==277707== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==277707== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==277707== by 0x1146C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==277707== by 0x110053: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==277707== by 0x112582: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==277707== by 0x11247D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==277707== by 0x112A91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==277707== by 0x10E855: main (TestHoneycombVertexMeshGenerator.cpp:18) ==277707== ==277707== Open file descriptor 22: /dev/nvidia0 ==277707== at 0x68C8764: open (open64.c:41) ==277707== by 0x121CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x121CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x1215407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x1215D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x121D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x1225FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x1201A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x11F648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0xB184023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==277707== by 0xB184FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==277707== by 0xFD4246A: ??? ==277707== by 0xB7D5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==277707== by 0xB7B1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==277707== by 0xB762CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==277707== by 0xB68FEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==277707== by 0xFD30F03: ??? ==277707== by 0xB6C44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==277707== by 0x7F14418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==277707== by 0x7EADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==277707== by 0x6BA4D38: PetscInitialize (pinit.c:924) ==277707== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==277707== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==277707== by 0x1146C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==277707== by 0x110053: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==277707== by 0x112582: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==277707== by 0x11247D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==277707== by 0x112A91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==277707== by 0x10E855: main (TestHoneycombVertexMeshGenerator.cpp:18) ==277707== ==277707== Open file descriptor 21: /dev/nvidia0 ==277707== at 0x68C8764: open (open64.c:41) ==277707== by 0x121CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x121CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x1215DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x121D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x1225FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x1201A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x11F648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0xB184023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==277707== by 0xB184FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==277707== by 0xFD4246A: ??? ==277707== by 0xB7D5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==277707== by 0xB7B1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==277707== by 0xB762CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==277707== by 0xB68FEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==277707== by 0xFD30F03: ??? ==277707== by 0xB6C44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==277707== by 0x7F14418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==277707== by 0x7EADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==277707== by 0x6BA4D38: PetscInitialize (pinit.c:924) ==277707== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==277707== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==277707== by 0x1146C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==277707== by 0x110053: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==277707== by 0x112582: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==277707== by 0x11247D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==277707== by 0x112A91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==277707== by 0x10E855: main (TestHoneycombVertexMeshGenerator.cpp:18) ==277707== ==277707== Open file descriptor 20: /dev/nvidia-uvm ==277707== at 0x68C8764: open (open64.c:41) ==277707== by 0x12036F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x1201A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x11F648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0xB184023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==277707== by 0xB184FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==277707== by 0xFD4246A: ??? ==277707== by 0xB7D5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==277707== by 0xB7B1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==277707== by 0xB762CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==277707== by 0xB68FEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==277707== by 0xFD30F03: ??? ==277707== by 0xB6C44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==277707== by 0x7F14418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==277707== by 0x7EADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==277707== by 0x6BA4D38: PetscInitialize (pinit.c:924) ==277707== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==277707== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==277707== by 0x1146C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==277707== by 0x110053: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==277707== by 0x112582: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==277707== by 0x11247D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==277707== by 0x112A91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==277707== by 0x10E855: main (TestHoneycombVertexMeshGenerator.cpp:18) ==277707== ==277707== Open file descriptor 19: /dev/nvidiactl ==277707== at 0x68C8764: open (open64.c:41) ==277707== by 0x121CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x121D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x1201A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0x11F648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==277707== by 0xB184023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==277707== by 0xB184FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==277707== by 0xFD4246A: ??? ==277707== by 0xB7D5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==277707== by 0xB7B1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==277707== by 0xB762CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==277707== by 0xB68FEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==277707== by 0xFD30F03: ??? ==277707== by 0xB6C44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==277707== by 0x7F14418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==277707== by 0x7EADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==277707== by 0x6BA4D38: PetscInitialize (pinit.c:924) ==277707== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==277707== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==277707== by 0x1146C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==277707== by 0x110053: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==277707== by 0x112582: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==277707== by 0x11247D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==277707== by 0x112A91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==277707== by 0x10E855: main (TestHoneycombVertexMeshGenerator.cpp:18) ==277707== ==277707== Open file descriptor 12: ==277707== at 0x68C922D: pipe (pipe.c:29) ==277707== by 0xFD3007D: ??? ==277707== by 0xB6C44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==277707== by 0x7F14418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==277707== by 0x7EADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==277707== by 0x6BA4D38: PetscInitialize (pinit.c:924) ==277707== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==277707== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==277707== by 0x1146C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==277707== by 0x110053: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==277707== by 0x112582: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==277707== by 0x11247D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==277707== by 0x112A91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==277707== by 0x10E855: main (TestHoneycombVertexMeshGenerator.cpp:18) ==277707== ==277707== Open file descriptor 8: /dev/shm/open_mpi.0000 ==277707== at 0x68CDBCC: __open_nocancel (open64_nocancel.c:39) ==277707== by 0x6851C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==277707== by 0x61F7822: ??? ==277707== by 0x61F796F: ??? ==277707== by 0xB7696DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==277707== by 0xB769938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==277707== by 0xB71F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==277707== by 0xB6C42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==277707== by 0x7F14418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==277707== by 0x7EADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==277707== by 0x6BA4D38: PetscInitialize (pinit.c:924) ==277707== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==277707== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==277707== by 0x1146C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==277707== by 0x110053: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==277707== by 0x112582: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==277707== by 0x11247D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==277707== by 0x112A91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==277707== by 0x10E855: main (TestHoneycombVertexMeshGenerator.cpp:18) ==277707== ==277707== Open file descriptor 111: ==277707== ==277707== ==277707== Open file descriptor 106: ==277707== ==277707== ==277707== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHoneycombVertexMeshGenerator_valgrind.txt ==277707== ==277707== ==277707== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==277707== ==277707== ==277707== ==277707== HEAP SUMMARY: ==277707== in use at exit: 1,875,667 bytes in 11,738 blocks ==277707== total heap usage: 421,014 allocs, 409,276 frees, 1,552,261,434 bytes allocated ==277707== ==277707== LEAK SUMMARY: ==277707== definitely lost: 0 bytes in 0 blocks ==277707== indirectly lost: 0 bytes in 0 blocks ==277707== possibly lost: 0 bytes in 0 blocks ==277707== still reachable: 24 bytes in 2 blocks ==277707== suppressed: 1,875,643 bytes in 11,736 blocks ==277707== Reachable blocks (those to which a pointer was found) are not shown. ==277707== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==277707== ==277707== For lists of detected and suppressed errors, rerun with: -s ==277707== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 50 from 50)