==278559== Memcheck, a memory error detector
==278559== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==278559== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==278559== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info
==278559== Parent PID: 277092
==278559== 
==278559== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints.
==278559==    This could cause spurious value errors to appear.
==278559==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==278559== Warning: noted but unhandled ioctl 0x27 with no size/direction hints.
==278559==    This could cause spurious value errors to appear.
==278559==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==278559== Warning: noted but unhandled ioctl 0x25 with no size/direction hints.
==278559==    This could cause spurious value errors to appear.
==278559==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==278559== Warning: noted but unhandled ioctl 0x17 with no size/direction hints.
==278559==    This could cause spurious value errors to appear.
==278559==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==278559== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess)
==278559== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess)
==278559== Warning: set address range perms: large range [0x1bf1f000, 0x3bf1e000) (noaccess)
==278559== 
==278559== FILE DESCRIPTORS: 14 open (3 std) at exit.
==278559== Open file descriptor 23: /dev/nvidia0
==278559==    at 0xD25C764: open (open64.c:41)
==278559==    by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AFCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1B066B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AF54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AF5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AFD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x111E9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==278559==    by 0x111E9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==278559==    by 0x18A3146A: ???
==278559==    by 0x140FBF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==278559==    by 0x140D7B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==278559==    by 0x14088CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==278559==    by 0x13FB5EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==278559==    by 0x18A1FF03: ???
==278559==    by 0x13FEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==278559==    by 0x104CC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==278559==    by 0x10465D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==278559==    by 0xF15CD38: PetscInitialize (pinit.c:924)
==278559==    by 0xCE5C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==278559==    by 0xCE5C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==278559==    by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==278559==    by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==278559==    by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==278559==    by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==278559==    by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==278559==    by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18)
==278559== 
==278559== Open file descriptor 22: /dev/nvidia0
==278559==    at 0xD25C764: open (open64.c:41)
==278559==    by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AFCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AF5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AF5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AFD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x111E9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==278559==    by 0x111E9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==278559==    by 0x18A3146A: ???
==278559==    by 0x140FBF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==278559==    by 0x140D7B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==278559==    by 0x14088CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==278559==    by 0x13FB5EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==278559==    by 0x18A1FF03: ???
==278559==    by 0x13FEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==278559==    by 0x104CC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==278559==    by 0x10465D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==278559==    by 0xF15CD38: PetscInitialize (pinit.c:924)
==278559==    by 0xCE5C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==278559==    by 0xCE5C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==278559==    by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==278559==    by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==278559==    by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==278559==    by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==278559==    by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==278559==    by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18)
==278559== 
==278559== Open file descriptor 21: /dev/nvidia0
==278559==    at 0xD25C764: open (open64.c:41)
==278559==    by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AFCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AF5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AFD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x111E9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==278559==    by 0x111E9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==278559==    by 0x18A3146A: ???
==278559==    by 0x140FBF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==278559==    by 0x140D7B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==278559==    by 0x14088CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==278559==    by 0x13FB5EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==278559==    by 0x18A1FF03: ???
==278559==    by 0x13FEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==278559==    by 0x104CC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==278559==    by 0x10465D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==278559==    by 0xF15CD38: PetscInitialize (pinit.c:924)
==278559==    by 0xCE5C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==278559==    by 0xCE5C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==278559==    by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==278559==    by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==278559==    by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==278559==    by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==278559==    by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==278559==    by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18)
==278559== 
==278559== Open file descriptor 20: /dev/nvidia-uvm
==278559==    at 0xD25C764: open (open64.c:41)
==278559==    by 0x1AE36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AE1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x111E9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==278559==    by 0x111E9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==278559==    by 0x18A3146A: ???
==278559==    by 0x140FBF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==278559==    by 0x140D7B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==278559==    by 0x14088CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==278559==    by 0x13FB5EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==278559==    by 0x18A1FF03: ???
==278559==    by 0x13FEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==278559==    by 0x104CC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==278559==    by 0x10465D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==278559==    by 0xF15CD38: PetscInitialize (pinit.c:924)
==278559==    by 0xCE5C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==278559==    by 0xCE5C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==278559==    by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==278559==    by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==278559==    by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==278559==    by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==278559==    by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==278559==    by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18)
==278559== 
==278559== Open file descriptor 19: /dev/nvidiactl
==278559==    at 0xD25C764: open (open64.c:41)
==278559==    by 0x1AFCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AFD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AE1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==278559==    by 0x111E9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==278559==    by 0x111E9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==278559==    by 0x18A3146A: ???
==278559==    by 0x140FBF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==278559==    by 0x140D7B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==278559==    by 0x14088CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==278559==    by 0x13FB5EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==278559==    by 0x18A1FF03: ???
==278559==    by 0x13FEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==278559==    by 0x104CC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==278559==    by 0x10465D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==278559==    by 0xF15CD38: PetscInitialize (pinit.c:924)
==278559==    by 0xCE5C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==278559==    by 0xCE5C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==278559==    by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==278559==    by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==278559==    by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==278559==    by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==278559==    by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==278559==    by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18)
==278559== 
==278559== Open file descriptor 12:
==278559==    at 0xD25D22D: pipe (pipe.c:29)
==278559==    by 0x18A1F07D: ???
==278559==    by 0x13FEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==278559==    by 0x104CC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==278559==    by 0x10465D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==278559==    by 0xF15CD38: PetscInitialize (pinit.c:924)
==278559==    by 0xCE5C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==278559==    by 0xCE5C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==278559==    by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==278559==    by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==278559==    by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==278559==    by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==278559==    by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==278559==    by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18)
==278559== 
==278559== Open file descriptor 8: /dev/shm/open_mpi.0000
==278559==    at 0xD261BCC: __open_nocancel (open64_nocancel.c:39)
==278559==    by 0xD1E5C4F: shm_open@@GLIBC_2.34 (shm_open.c:40)
==278559==    by 0xCE90822: ???
==278559==    by 0xCE9096F: ???
==278559==    by 0x1408F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==278559==    by 0x1408F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==278559==    by 0x14045922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==278559==    by 0x13FEA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==278559==    by 0x104CC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==278559==    by 0x10465D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==278559==    by 0xF15CD38: PetscInitialize (pinit.c:924)
==278559==    by 0xCE5C153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==278559==    by 0xCE5C1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==278559==    by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==278559==    by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==278559==    by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==278559==    by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==278559==    by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==278559==    by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18)
==278559== 
==278559== Open file descriptor 111:
==278559==    <inherited from parent>
==278559== 
==278559== Open file descriptor 106:
==278559==    <inherited from parent>
==278559== 
==278559== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt
==278559==    <inherited from parent>
==278559== 
==278559== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==278559==    <inherited from parent>
==278559== 
==278559== 
==278559== HEAP SUMMARY:
==278559==     in use at exit: 1,875,940 bytes in 11,738 blocks
==278559==   total heap usage: 66,410 allocs, 54,672 frees, 1,533,892,546 bytes allocated
==278559== 
==278559== LEAK SUMMARY:
==278559==    definitely lost: 0 bytes in 0 blocks
==278559==    indirectly lost: 0 bytes in 0 blocks
==278559==      possibly lost: 0 bytes in 0 blocks
==278559==    still reachable: 24 bytes in 2 blocks
==278559==         suppressed: 1,875,916 bytes in 11,736 blocks
==278559== Reachable blocks (those to which a pointer was found) are not shown.
==278559== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==278559== 
==278559== For lists of detected and suppressed errors, rerun with: -s
==278559== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)