==313034== Memcheck, a memory error detector ==313034== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==313034== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==313034== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFunctionalCalculator -malloc_debug -malloc_dump -memory_info ==313034== Parent PID: 312080 ==313034== ==313034== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==313034== This could cause spurious value errors to appear. ==313034== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==313034== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==313034== This could cause spurious value errors to appear. ==313034== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==313034== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==313034== This could cause spurious value errors to appear. ==313034== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==313034== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==313034== This could cause spurious value errors to appear. ==313034== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==313034== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==313034== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==313034== Warning: set address range perms: large range [0x1351f000, 0x3351e000) (noaccess) ==313034== ==313034== FILE DESCRIPTORS: 14 open (3 std) at exit. ==313034== Open file descriptor 23: /dev/nvidia0 ==313034== at 0x8203764: open (open64.c:41) ==313034== by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x125CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x12666B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x12554026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x1255D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x125D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0xB544023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==313034== by 0xB544FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==313034== by 0x1015546A: ??? ==313034== by 0xBB97F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==313034== by 0xBB73B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==313034== by 0xBB24CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==313034== by 0xBA51EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==313034== by 0x10143F03: ??? ==313034== by 0xBA864CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==313034== by 0x7A25418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==313034== by 0x79BED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==313034== by 0x668AD38: PetscInitialize (pinit.c:924) ==313034== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==313034== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==313034== by 0x12B976: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==313034== by 0x126B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==313034== by 0x1294EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==313034== by 0x12938C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==313034== by 0x129A23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==313034== by 0x124F75: main (TestAbstractFunctionalCalculator.cpp:19) ==313034== ==313034== Open file descriptor 22: /dev/nvidia0 ==313034== at 0x8203764: open (open64.c:41) ==313034== by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x125CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x1255407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x1255D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x125D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0xB544023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==313034== by 0xB544FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==313034== by 0x1015546A: ??? ==313034== by 0xBB97F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==313034== by 0xBB73B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==313034== by 0xBB24CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==313034== by 0xBA51EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==313034== by 0x10143F03: ??? ==313034== by 0xBA864CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==313034== by 0x7A25418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==313034== by 0x79BED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==313034== by 0x668AD38: PetscInitialize (pinit.c:924) ==313034== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==313034== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==313034== by 0x12B976: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==313034== by 0x126B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==313034== by 0x1294EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==313034== by 0x12938C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==313034== by 0x129A23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==313034== by 0x124F75: main (TestAbstractFunctionalCalculator.cpp:19) ==313034== ==313034== Open file descriptor 21: /dev/nvidia0 ==313034== at 0x8203764: open (open64.c:41) ==313034== by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x125CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x1255DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x125D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0xB544023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==313034== by 0xB544FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==313034== by 0x1015546A: ??? ==313034== by 0xBB97F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==313034== by 0xBB73B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==313034== by 0xBB24CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==313034== by 0xBA51EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==313034== by 0x10143F03: ??? ==313034== by 0xBA864CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==313034== by 0x7A25418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==313034== by 0x79BED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==313034== by 0x668AD38: PetscInitialize (pinit.c:924) ==313034== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==313034== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==313034== by 0x12B976: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==313034== by 0x126B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==313034== by 0x1294EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==313034== by 0x12938C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==313034== by 0x129A23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==313034== by 0x124F75: main (TestAbstractFunctionalCalculator.cpp:19) ==313034== ==313034== Open file descriptor 20: /dev/nvidia-uvm ==313034== at 0x8203764: open (open64.c:41) ==313034== by 0x12436F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x1241A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0xB544023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==313034== by 0xB544FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==313034== by 0x1015546A: ??? ==313034== by 0xBB97F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==313034== by 0xBB73B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==313034== by 0xBB24CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==313034== by 0xBA51EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==313034== by 0x10143F03: ??? ==313034== by 0xBA864CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==313034== by 0x7A25418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==313034== by 0x79BED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==313034== by 0x668AD38: PetscInitialize (pinit.c:924) ==313034== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==313034== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==313034== by 0x12B976: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==313034== by 0x126B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==313034== by 0x1294EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==313034== by 0x12938C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==313034== by 0x129A23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==313034== by 0x124F75: main (TestAbstractFunctionalCalculator.cpp:19) ==313034== ==313034== Open file descriptor 19: /dev/nvidiactl ==313034== at 0x8203764: open (open64.c:41) ==313034== by 0x125CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x125D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x1241A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==313034== by 0xB544023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==313034== by 0xB544FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==313034== by 0x1015546A: ??? ==313034== by 0xBB97F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==313034== by 0xBB73B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==313034== by 0xBB24CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==313034== by 0xBA51EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==313034== by 0x10143F03: ??? ==313034== by 0xBA864CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==313034== by 0x7A25418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==313034== by 0x79BED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==313034== by 0x668AD38: PetscInitialize (pinit.c:924) ==313034== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==313034== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==313034== by 0x12B976: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==313034== by 0x126B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==313034== by 0x1294EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==313034== by 0x12938C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==313034== by 0x129A23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==313034== by 0x124F75: main (TestAbstractFunctionalCalculator.cpp:19) ==313034== ==313034== Open file descriptor 12: ==313034== at 0x820422D: pipe (pipe.c:29) ==313034== by 0x1014307D: ??? ==313034== by 0xBA864CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==313034== by 0x7A25418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==313034== by 0x79BED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==313034== by 0x668AD38: PetscInitialize (pinit.c:924) ==313034== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==313034== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==313034== by 0x12B976: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==313034== by 0x126B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==313034== by 0x1294EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==313034== by 0x12938C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==313034== by 0x129A23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==313034== by 0x124F75: main (TestAbstractFunctionalCalculator.cpp:19) ==313034== ==313034== Open file descriptor 8: /dev/shm/open_mpi.0000 ==313034== at 0x8208BCC: __open_nocancel (open64_nocancel.c:39) ==313034== by 0x818CC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==313034== by 0x7914822: ??? ==313034== by 0x791496F: ??? ==313034== by 0xBB2B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==313034== by 0xBB2B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==313034== by 0xBAE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==313034== by 0xBA862DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==313034== by 0x7A25418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==313034== by 0x79BED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==313034== by 0x668AD38: PetscInitialize (pinit.c:924) ==313034== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==313034== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==313034== by 0x12B976: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==313034== by 0x126B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==313034== by 0x1294EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==313034== by 0x12938C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==313034== by 0x129A23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==313034== by 0x124F75: main (TestAbstractFunctionalCalculator.cpp:19) ==313034== ==313034== Open file descriptor 112: ==313034== ==313034== ==313034== Open file descriptor 107: ==313034== ==313034== ==313034== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFunctionalCalculator_valgrind.txt ==313034== ==313034== ==313034== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==313034== ==313034== ==313034== ==313034== HEAP SUMMARY: ==313034== in use at exit: 1,875,730 bytes in 11,738 blocks ==313034== total heap usage: 98,327 allocs, 86,589 frees, 1,535,184,003 bytes allocated ==313034== ==313034== LEAK SUMMARY: ==313034== definitely lost: 0 bytes in 0 blocks ==313034== indirectly lost: 0 bytes in 0 blocks ==313034== possibly lost: 0 bytes in 0 blocks ==313034== still reachable: 24 bytes in 2 blocks ==313034== suppressed: 1,875,706 bytes in 11,736 blocks ==313034== Reachable blocks (those to which a pointer was found) are not shown. ==313034== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==313034== ==313034== For lists of detected and suppressed errors, rerun with: -s ==313034== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)