==329463== Memcheck, a memory error detector ==329463== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==329463== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==329463== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestRushLarsen -malloc_debug -malloc_dump -memory_info ==329463== Parent PID: 312080 ==329463== ==329463== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==329463== This could cause spurious value errors to appear. ==329463== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==329463== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==329463== This could cause spurious value errors to appear. ==329463== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==329463== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==329463== This could cause spurious value errors to appear. ==329463== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==329463== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==329463== This could cause spurious value errors to appear. ==329463== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==329463== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==329463== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==329463== Warning: set address range perms: large range [0x1732e000, 0x3732d000) (noaccess) ==329463== ==329463== FILE DESCRIPTORS: 14 open (3 std) at exit. ==329463== Open file descriptor 23: /dev/nvidia0 ==329463== at 0x9C6E764: open (open64.c:41) ==329463== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x16466B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x16354026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x163D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0xE553023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==329463== by 0xE553FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==329463== by 0x13FA746A: ??? ==329463== by 0xEBA8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==329463== by 0xEB84B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==329463== by 0xEB35CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==329463== by 0xEA60EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==329463== by 0x13F95F03: ??? ==329463== by 0xEA954CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==329463== by 0x98A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==329463== by 0x983BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==329463== by 0x8507D38: PetscInitialize (pinit.c:924) ==329463== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==329463== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==329463== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==329463== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==329463== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==329463== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==329463== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==329463== by 0x114C35: main (TestRushLarsen.cpp:18) ==329463== ==329463== Open file descriptor 22: /dev/nvidia0 ==329463== at 0x9C6E764: open (open64.c:41) ==329463== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x1635407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x163D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0xE553023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==329463== by 0xE553FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==329463== by 0x13FA746A: ??? ==329463== by 0xEBA8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==329463== by 0xEB84B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==329463== by 0xEB35CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==329463== by 0xEA60EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==329463== by 0x13F95F03: ??? ==329463== by 0xEA954CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==329463== by 0x98A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==329463== by 0x983BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==329463== by 0x8507D38: PetscInitialize (pinit.c:924) ==329463== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==329463== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==329463== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==329463== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==329463== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==329463== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==329463== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==329463== by 0x114C35: main (TestRushLarsen.cpp:18) ==329463== ==329463== Open file descriptor 21: /dev/nvidia0 ==329463== at 0x9C6E764: open (open64.c:41) ==329463== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x163CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x1635DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x163D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0xE553023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==329463== by 0xE553FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==329463== by 0x13FA746A: ??? ==329463== by 0xEBA8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==329463== by 0xEB84B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==329463== by 0xEB35CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==329463== by 0xEA60EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==329463== by 0x13F95F03: ??? ==329463== by 0xEA954CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==329463== by 0x98A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==329463== by 0x983BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==329463== by 0x8507D38: PetscInitialize (pinit.c:924) ==329463== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==329463== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==329463== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==329463== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==329463== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==329463== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==329463== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==329463== by 0x114C35: main (TestRushLarsen.cpp:18) ==329463== ==329463== Open file descriptor 20: /dev/nvidia-uvm ==329463== at 0x9C6E764: open (open64.c:41) ==329463== by 0x16236F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x1621A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0xE553023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==329463== by 0xE553FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==329463== by 0x13FA746A: ??? ==329463== by 0xEBA8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==329463== by 0xEB84B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==329463== by 0xEB35CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==329463== by 0xEA60EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==329463== by 0x13F95F03: ??? ==329463== by 0xEA954CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==329463== by 0x98A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==329463== by 0x983BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==329463== by 0x8507D38: PetscInitialize (pinit.c:924) ==329463== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==329463== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==329463== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==329463== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==329463== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==329463== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==329463== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==329463== by 0x114C35: main (TestRushLarsen.cpp:18) ==329463== ==329463== Open file descriptor 19: /dev/nvidiactl ==329463== at 0x9C6E764: open (open64.c:41) ==329463== by 0x163CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x163D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x1621A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==329463== by 0xE553023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==329463== by 0xE553FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==329463== by 0x13FA746A: ??? ==329463== by 0xEBA8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==329463== by 0xEB84B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==329463== by 0xEB35CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==329463== by 0xEA60EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==329463== by 0x13F95F03: ??? ==329463== by 0xEA954CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==329463== by 0x98A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==329463== by 0x983BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==329463== by 0x8507D38: PetscInitialize (pinit.c:924) ==329463== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==329463== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==329463== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==329463== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==329463== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==329463== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==329463== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==329463== by 0x114C35: main (TestRushLarsen.cpp:18) ==329463== ==329463== Open file descriptor 12: ==329463== at 0x9C6F22D: pipe (pipe.c:29) ==329463== by 0x13F9507D: ??? ==329463== by 0xEA954CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==329463== by 0x98A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==329463== by 0x983BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==329463== by 0x8507D38: PetscInitialize (pinit.c:924) ==329463== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==329463== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==329463== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==329463== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==329463== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==329463== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==329463== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==329463== by 0x114C35: main (TestRushLarsen.cpp:18) ==329463== ==329463== Open file descriptor 8: /dev/shm/open_mpi.0000 ==329463== at 0x9C73BCC: __open_nocancel (open64_nocancel.c:39) ==329463== by 0x9BF7C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==329463== by 0x9791822: ??? ==329463== by 0x979196F: ??? ==329463== by 0xEB3C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==329463== by 0xEB3C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==329463== by 0xEAF2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==329463== by 0xEA952DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==329463== by 0x98A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==329463== by 0x983BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==329463== by 0x8507D38: PetscInitialize (pinit.c:924) ==329463== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==329463== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==329463== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==329463== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==329463== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==329463== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==329463== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==329463== by 0x114C35: main (TestRushLarsen.cpp:18) ==329463== ==329463== Open file descriptor 112: ==329463== ==329463== ==329463== Open file descriptor 107: ==329463== ==329463== ==329463== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRushLarsen_valgrind.txt ==329463== ==329463== ==329463== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==329463== ==329463== ==329463== ==329463== HEAP SUMMARY: ==329463== in use at exit: 1,879,439 bytes in 11,742 blocks ==329463== total heap usage: 1,060,296 allocs, 1,048,554 frees, 1,973,498,424 bytes allocated ==329463== ==329463== LEAK SUMMARY: ==329463== definitely lost: 0 bytes in 0 blocks ==329463== indirectly lost: 0 bytes in 0 blocks ==329463== possibly lost: 0 bytes in 0 blocks ==329463== still reachable: 3,647 bytes in 10 blocks ==329463== suppressed: 1,875,792 bytes in 11,732 blocks ==329463== Reachable blocks (those to which a pointer was found) are not shown. ==329463== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==329463== ==329463== For lists of detected and suppressed errors, rerun with: -s ==329463== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 49 from 49)