==348670== Memcheck, a memory error detector ==348670== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==348670== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==348670== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractCvodeSystem -malloc_debug -malloc_dump -memory_info ==348670== Parent PID: 347948 ==348670== ==348670== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==348670== This could cause spurious value errors to appear. ==348670== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==348670== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==348670== This could cause spurious value errors to appear. ==348670== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==348670== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==348670== This could cause spurious value errors to appear. ==348670== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==348670== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==348670== This could cause spurious value errors to appear. ==348670== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==348670== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==348670== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==348670== Warning: set address range perms: large range [0x1051f000, 0x3051e000) (noaccess) ==348670== ==348670== FILE DESCRIPTORS: 14 open (3 std) at exit. ==348670== Open file descriptor 23: /dev/nvidia0 ==348670== at 0x6445764: open (open64.c:41) ==348670== by 0xF5CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF5CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF666B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF554026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF55D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF5D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF65FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF41A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF3648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0x8789023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348670== by 0x8789FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348670== by 0xB1DC46A: ??? ==348670== by 0x8DDCF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348670== by 0x8DB8B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348670== by 0x8D69CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==348670== by 0x8C96EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348670== by 0xB1CAF03: ??? ==348670== by 0x8CCB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348670== by 0x6044418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348670== by 0x5FDDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348670== by 0x4CD4D38: PetscInitialize (pinit.c:924) ==348670== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==348670== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==348670== by 0x136DA1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==348670== by 0x131171: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==348670== by 0x133ED4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==348670== by 0x133D74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==348670== by 0x13440B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==348670== by 0x12EFD5: main (TestAbstractCvodeSystem.cpp:19) ==348670== ==348670== Open file descriptor 22: /dev/nvidia0 ==348670== at 0x6445764: open (open64.c:41) ==348670== by 0xF5CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF5CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF55407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF55D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF5D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF65FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF41A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF3648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0x8789023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348670== by 0x8789FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348670== by 0xB1DC46A: ??? ==348670== by 0x8DDCF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348670== by 0x8DB8B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348670== by 0x8D69CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==348670== by 0x8C96EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348670== by 0xB1CAF03: ??? ==348670== by 0x8CCB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348670== by 0x6044418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348670== by 0x5FDDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348670== by 0x4CD4D38: PetscInitialize (pinit.c:924) ==348670== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==348670== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==348670== by 0x136DA1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==348670== by 0x131171: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==348670== by 0x133ED4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==348670== by 0x133D74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==348670== by 0x13440B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==348670== by 0x12EFD5: main (TestAbstractCvodeSystem.cpp:19) ==348670== ==348670== Open file descriptor 21: /dev/nvidia0 ==348670== at 0x6445764: open (open64.c:41) ==348670== by 0xF5CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF5CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF55DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF5D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF65FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF41A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF3648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0x8789023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348670== by 0x8789FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348670== by 0xB1DC46A: ??? ==348670== by 0x8DDCF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348670== by 0x8DB8B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348670== by 0x8D69CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==348670== by 0x8C96EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348670== by 0xB1CAF03: ??? ==348670== by 0x8CCB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348670== by 0x6044418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348670== by 0x5FDDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348670== by 0x4CD4D38: PetscInitialize (pinit.c:924) ==348670== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==348670== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==348670== by 0x136DA1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==348670== by 0x131171: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==348670== by 0x133ED4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==348670== by 0x133D74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==348670== by 0x13440B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==348670== by 0x12EFD5: main (TestAbstractCvodeSystem.cpp:19) ==348670== ==348670== Open file descriptor 20: /dev/nvidia-uvm ==348670== at 0x6445764: open (open64.c:41) ==348670== by 0xF436F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF41A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF3648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0x8789023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348670== by 0x8789FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348670== by 0xB1DC46A: ??? ==348670== by 0x8DDCF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348670== by 0x8DB8B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348670== by 0x8D69CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==348670== by 0x8C96EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348670== by 0xB1CAF03: ??? ==348670== by 0x8CCB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348670== by 0x6044418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348670== by 0x5FDDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348670== by 0x4CD4D38: PetscInitialize (pinit.c:924) ==348670== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==348670== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==348670== by 0x136DA1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==348670== by 0x131171: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==348670== by 0x133ED4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==348670== by 0x133D74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==348670== by 0x13440B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==348670== by 0x12EFD5: main (TestAbstractCvodeSystem.cpp:19) ==348670== ==348670== Open file descriptor 19: /dev/nvidiactl ==348670== at 0x6445764: open (open64.c:41) ==348670== by 0xF5CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF5D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF41A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0xF3648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348670== by 0x8789023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348670== by 0x8789FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348670== by 0xB1DC46A: ??? ==348670== by 0x8DDCF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348670== by 0x8DB8B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348670== by 0x8D69CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==348670== by 0x8C96EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348670== by 0xB1CAF03: ??? ==348670== by 0x8CCB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348670== by 0x6044418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348670== by 0x5FDDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348670== by 0x4CD4D38: PetscInitialize (pinit.c:924) ==348670== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==348670== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==348670== by 0x136DA1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==348670== by 0x131171: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==348670== by 0x133ED4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==348670== by 0x133D74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==348670== by 0x13440B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==348670== by 0x12EFD5: main (TestAbstractCvodeSystem.cpp:19) ==348670== ==348670== Open file descriptor 12: ==348670== at 0x644622D: pipe (pipe.c:29) ==348670== by 0xB1CA07D: ??? ==348670== by 0x8CCB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348670== by 0x6044418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348670== by 0x5FDDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348670== by 0x4CD4D38: PetscInitialize (pinit.c:924) ==348670== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==348670== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==348670== by 0x136DA1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==348670== by 0x131171: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==348670== by 0x133ED4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==348670== by 0x133D74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==348670== by 0x13440B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==348670== by 0x12EFD5: main (TestAbstractCvodeSystem.cpp:19) ==348670== ==348670== Open file descriptor 8: /dev/shm/open_mpi.0000 ==348670== at 0x644ABCC: __open_nocancel (open64_nocancel.c:39) ==348670== by 0x63CEC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==348670== by 0x4B71822: ??? ==348670== by 0x4B7196F: ??? ==348670== by 0x8D706DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==348670== by 0x8D70938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==348670== by 0x8D26922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==348670== by 0x8CCB2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348670== by 0x6044418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348670== by 0x5FDDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348670== by 0x4CD4D38: PetscInitialize (pinit.c:924) ==348670== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==348670== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==348670== by 0x136DA1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==348670== by 0x131171: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==348670== by 0x133ED4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==348670== by 0x133D74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==348670== by 0x13440B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==348670== by 0x12EFD5: main (TestAbstractCvodeSystem.cpp:19) ==348670== ==348670== Open file descriptor 116: ==348670== ==348670== ==348670== Open file descriptor 113: ==348670== ==348670== ==348670== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractCvodeSystem_valgrind.txt ==348670== ==348670== ==348670== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==348670== ==348670== ==348670== ==348670== HEAP SUMMARY: ==348670== in use at exit: 1,875,273 bytes in 11,738 blocks ==348670== total heap usage: 55,013 allocs, 43,275 frees, 1,532,994,742 bytes allocated ==348670== ==348670== LEAK SUMMARY: ==348670== definitely lost: 0 bytes in 0 blocks ==348670== indirectly lost: 0 bytes in 0 blocks ==348670== possibly lost: 0 bytes in 0 blocks ==348670== still reachable: 24 bytes in 2 blocks ==348670== suppressed: 1,875,249 bytes in 11,736 blocks ==348670== Reachable blocks (those to which a pointer was found) are not shown. ==348670== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==348670== ==348670== For lists of detected and suppressed errors, rerun with: -s ==348670== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 50 from 50)