==364518== Memcheck, a memory error detector ==364518== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==364518== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==364518== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayGenerator -malloc_debug -malloc_dump -memory_info ==364518== Parent PID: 347948 ==364518== ==364518== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==364518== This could cause spurious value errors to appear. ==364518== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==364518== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==364518== This could cause spurious value errors to appear. ==364518== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==364518== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==364518== This could cause spurious value errors to appear. ==364518== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==364518== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==364518== This could cause spurious value errors to appear. ==364518== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==364518== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==364518== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==364518== Warning: set address range perms: large range [0x1391f000, 0x3391e000) (noaccess) ==364518== ==364518== FILE DESCRIPTORS: 14 open (3 std) at exit. ==364518== Open file descriptor 23: /dev/nvidia0 ==364518== at 0x6BD7764: open (open64.c:41) ==364518== by 0x129CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x129CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x12A66B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x12954026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x1295D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x129D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x12A5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x1281A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0xB1FB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==364518== by 0xB1FBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==364518== by 0x1042446A: ??? ==364518== by 0xB84EF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==364518== by 0xB82AB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==364518== by 0xB7DBCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==364518== by 0xB708EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==364518== by 0x10412F03: ??? ==364518== by 0xB73D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==364518== by 0x5EDD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==364518== by 0x5E76D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==364518== by 0x4B42D38: PetscInitialize (pinit.c:924) ==364518== by 0x4A18153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==364518== by 0x4A181A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==364518== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==364518== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==364518== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==364518== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==364518== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==364518== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==364518== ==364518== Open file descriptor 22: /dev/nvidia0 ==364518== at 0x6BD7764: open (open64.c:41) ==364518== by 0x129CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x129CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x1295407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x1295D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x129D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x12A5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x1281A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0xB1FB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==364518== by 0xB1FBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==364518== by 0x1042446A: ??? ==364518== by 0xB84EF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==364518== by 0xB82AB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==364518== by 0xB7DBCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==364518== by 0xB708EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==364518== by 0x10412F03: ??? ==364518== by 0xB73D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==364518== by 0x5EDD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==364518== by 0x5E76D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==364518== by 0x4B42D38: PetscInitialize (pinit.c:924) ==364518== by 0x4A18153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==364518== by 0x4A181A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==364518== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==364518== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==364518== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==364518== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==364518== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==364518== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==364518== ==364518== Open file descriptor 21: /dev/nvidia0 ==364518== at 0x6BD7764: open (open64.c:41) ==364518== by 0x129CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x129CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x1295DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x129D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x12A5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x1281A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0xB1FB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==364518== by 0xB1FBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==364518== by 0x1042446A: ??? ==364518== by 0xB84EF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==364518== by 0xB82AB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==364518== by 0xB7DBCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==364518== by 0xB708EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==364518== by 0x10412F03: ??? ==364518== by 0xB73D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==364518== by 0x5EDD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==364518== by 0x5E76D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==364518== by 0x4B42D38: PetscInitialize (pinit.c:924) ==364518== by 0x4A18153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==364518== by 0x4A181A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==364518== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==364518== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==364518== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==364518== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==364518== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==364518== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==364518== ==364518== Open file descriptor 20: /dev/nvidia-uvm ==364518== at 0x6BD7764: open (open64.c:41) ==364518== by 0x12836F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x1281A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0xB1FB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==364518== by 0xB1FBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==364518== by 0x1042446A: ??? ==364518== by 0xB84EF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==364518== by 0xB82AB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==364518== by 0xB7DBCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==364518== by 0xB708EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==364518== by 0x10412F03: ??? ==364518== by 0xB73D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==364518== by 0x5EDD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==364518== by 0x5E76D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==364518== by 0x4B42D38: PetscInitialize (pinit.c:924) ==364518== by 0x4A18153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==364518== by 0x4A181A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==364518== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==364518== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==364518== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==364518== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==364518== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==364518== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==364518== ==364518== Open file descriptor 19: /dev/nvidiactl ==364518== at 0x6BD7764: open (open64.c:41) ==364518== by 0x129CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x129D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x1281A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==364518== by 0xB1FB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==364518== by 0xB1FBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==364518== by 0x1042446A: ??? ==364518== by 0xB84EF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==364518== by 0xB82AB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==364518== by 0xB7DBCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==364518== by 0xB708EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==364518== by 0x10412F03: ??? ==364518== by 0xB73D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==364518== by 0x5EDD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==364518== by 0x5E76D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==364518== by 0x4B42D38: PetscInitialize (pinit.c:924) ==364518== by 0x4A18153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==364518== by 0x4A181A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==364518== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==364518== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==364518== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==364518== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==364518== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==364518== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==364518== ==364518== Open file descriptor 12: ==364518== at 0x6BD822D: pipe (pipe.c:29) ==364518== by 0x1041207D: ??? ==364518== by 0xB73D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==364518== by 0x5EDD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==364518== by 0x5E76D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==364518== by 0x4B42D38: PetscInitialize (pinit.c:924) ==364518== by 0x4A18153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==364518== by 0x4A181A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==364518== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==364518== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==364518== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==364518== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==364518== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==364518== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==364518== ==364518== Open file descriptor 8: /dev/shm/open_mpi.0000 ==364518== at 0x6BDCBCC: __open_nocancel (open64_nocancel.c:39) ==364518== by 0x6B60C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==364518== by 0x5DCC822: ??? ==364518== by 0x5DCC96F: ??? ==364518== by 0xB7E26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==364518== by 0xB7E2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==364518== by 0xB798922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==364518== by 0xB73D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==364518== by 0x5EDD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==364518== by 0x5E76D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==364518== by 0x4B42D38: PetscInitialize (pinit.c:924) ==364518== by 0x4A18153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==364518== by 0x4A181A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==364518== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==364518== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==364518== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==364518== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==364518== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==364518== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==364518== ==364518== Open file descriptor 116: ==364518== ==364518== ==364518== Open file descriptor 113: ==364518== ==364518== ==364518== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayGenerator_valgrind.txt ==364518== ==364518== ==364518== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==364518== ==364518== ==364518== ==364518== HEAP SUMMARY: ==364518== in use at exit: 1,875,798 bytes in 11,738 blocks ==364518== total heap usage: 635,605 allocs, 623,867 frees, 1,981,670,482 bytes allocated ==364518== ==364518== LEAK SUMMARY: ==364518== definitely lost: 0 bytes in 0 blocks ==364518== indirectly lost: 0 bytes in 0 blocks ==364518== possibly lost: 0 bytes in 0 blocks ==364518== still reachable: 24 bytes in 2 blocks ==364518== suppressed: 1,875,774 bytes in 11,736 blocks ==364518== Reachable blocks (those to which a pointer was found) are not shown. ==364518== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==364518== ==364518== For lists of detected and suppressed errors, rerun with: -s ==364518== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)