==363449== Memcheck, a memory error detector ==363449== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==363449== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==363449== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewSrnModelTutorial -malloc_debug -malloc_dump -memory_info ==363449== Parent PID: 347948 ==363449== ==363449== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==363449== This could cause spurious value errors to appear. ==363449== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==363449== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==363449== This could cause spurious value errors to appear. ==363449== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==363449== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==363449== This could cause spurious value errors to appear. ==363449== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==363449== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==363449== This could cause spurious value errors to appear. ==363449== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==363449== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==363449== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==363449== Warning: set address range perms: large range [0x1bf1f000, 0x3bf1e000) (noaccess) ==363449== ==363449== FILE DESCRIPTORS: 14 open (3 std) at exit. ==363449== Open file descriptor 23: /dev/nvidia0 ==363449== at 0x10395764: open (open64.c:41) ==363449== by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AFCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1B066B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AF54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AF5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AFD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x13AA1023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==363449== by 0x13AA1FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==363449== by 0x18A3146A: ??? ==363449== by 0x140F2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==363449== by 0x140CEB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==363449== by 0x1407FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363449== by 0x13FACEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363449== by 0x18A1FF03: ??? ==363449== by 0x13FE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363449== by 0xFBB7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363449== by 0xFB50D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363449== by 0xE847D38: PetscInitialize (pinit.c:924) ==363449== by 0xE6B2153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==363449== by 0xE6B21A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==363449== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==363449== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==363449== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==363449== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==363449== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==363449== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) ==363449== ==363449== Open file descriptor 22: /dev/nvidia0 ==363449== at 0x10395764: open (open64.c:41) ==363449== by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AFCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AF5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AF5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AFD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x13AA1023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==363449== by 0x13AA1FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==363449== by 0x18A3146A: ??? ==363449== by 0x140F2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==363449== by 0x140CEB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==363449== by 0x1407FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363449== by 0x13FACEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363449== by 0x18A1FF03: ??? ==363449== by 0x13FE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363449== by 0xFBB7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363449== by 0xFB50D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363449== by 0xE847D38: PetscInitialize (pinit.c:924) ==363449== by 0xE6B2153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==363449== by 0xE6B21A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==363449== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==363449== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==363449== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==363449== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==363449== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==363449== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) ==363449== ==363449== Open file descriptor 21: /dev/nvidia0 ==363449== at 0x10395764: open (open64.c:41) ==363449== by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AFCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AF5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AFD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x13AA1023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==363449== by 0x13AA1FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==363449== by 0x18A3146A: ??? ==363449== by 0x140F2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==363449== by 0x140CEB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==363449== by 0x1407FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363449== by 0x13FACEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363449== by 0x18A1FF03: ??? ==363449== by 0x13FE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363449== by 0xFBB7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363449== by 0xFB50D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363449== by 0xE847D38: PetscInitialize (pinit.c:924) ==363449== by 0xE6B2153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==363449== by 0xE6B21A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==363449== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==363449== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==363449== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==363449== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==363449== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==363449== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) ==363449== ==363449== Open file descriptor 20: /dev/nvidia-uvm ==363449== at 0x10395764: open (open64.c:41) ==363449== by 0x1AE36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AE1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x13AA1023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==363449== by 0x13AA1FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==363449== by 0x18A3146A: ??? ==363449== by 0x140F2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==363449== by 0x140CEB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==363449== by 0x1407FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363449== by 0x13FACEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363449== by 0x18A1FF03: ??? ==363449== by 0x13FE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363449== by 0xFBB7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363449== by 0xFB50D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363449== by 0xE847D38: PetscInitialize (pinit.c:924) ==363449== by 0xE6B2153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==363449== by 0xE6B21A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==363449== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==363449== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==363449== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==363449== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==363449== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==363449== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) ==363449== ==363449== Open file descriptor 19: /dev/nvidiactl ==363449== at 0x10395764: open (open64.c:41) ==363449== by 0x1AFCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AFD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AE1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==363449== by 0x13AA1023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==363449== by 0x13AA1FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==363449== by 0x18A3146A: ??? ==363449== by 0x140F2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==363449== by 0x140CEB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==363449== by 0x1407FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363449== by 0x13FACEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363449== by 0x18A1FF03: ??? ==363449== by 0x13FE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363449== by 0xFBB7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363449== by 0xFB50D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363449== by 0xE847D38: PetscInitialize (pinit.c:924) ==363449== by 0xE6B2153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==363449== by 0xE6B21A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==363449== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==363449== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==363449== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==363449== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==363449== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==363449== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) ==363449== ==363449== Open file descriptor 12: ==363449== at 0x1039622D: pipe (pipe.c:29) ==363449== by 0x18A1F07D: ??? ==363449== by 0x13FE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363449== by 0xFBB7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363449== by 0xFB50D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363449== by 0xE847D38: PetscInitialize (pinit.c:924) ==363449== by 0xE6B2153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==363449== by 0xE6B21A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==363449== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==363449== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==363449== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==363449== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==363449== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==363449== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) ==363449== ==363449== Open file descriptor 8: /dev/shm/open_mpi.0000 ==363449== at 0x1039ABCC: __open_nocancel (open64_nocancel.c:39) ==363449== by 0x1031EC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==363449== by 0xE6E6822: ??? ==363449== by 0xE6E696F: ??? ==363449== by 0x140866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363449== by 0x14086938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363449== by 0x1403C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==363449== by 0x13FE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==363449== by 0xFBB7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363449== by 0xFB50D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==363449== by 0xE847D38: PetscInitialize (pinit.c:924) ==363449== by 0xE6B2153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==363449== by 0xE6B21A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==363449== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==363449== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==363449== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==363449== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==363449== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==363449== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) ==363449== ==363449== Open file descriptor 116: ==363449== ==363449== ==363449== Open file descriptor 113: ==363449== ==363449== ==363449== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt ==363449== ==363449== ==363449== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==363449== ==363449== ==363449== ==363449== HEAP SUMMARY: ==363449== in use at exit: 1,875,911 bytes in 11,735 blocks ==363449== total heap usage: 3,826,783 allocs, 3,815,048 frees, 1,704,450,217 bytes allocated ==363449== ==363449== LEAK SUMMARY: ==363449== definitely lost: 0 bytes in 0 blocks ==363449== indirectly lost: 0 bytes in 0 blocks ==363449== possibly lost: 0 bytes in 0 blocks ==363449== still reachable: 56 bytes in 3 blocks ==363449== suppressed: 1,875,855 bytes in 11,732 blocks ==363449== Reachable blocks (those to which a pointer was found) are not shown. ==363449== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==363449== ==363449== For lists of detected and suppressed errors, rerun with: -s ==363449== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 52 from 52)