==348947== Memcheck, a memory error detector ==348947== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==348947== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==348947== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestHdf5Converters -malloc_debug -malloc_dump -memory_info ==348947== Parent PID: 347948 ==348947== ==348947== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==348947== This could cause spurious value errors to appear. ==348947== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==348947== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==348947== This could cause spurious value errors to appear. ==348947== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==348947== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==348947== This could cause spurious value errors to appear. ==348947== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==348947== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==348947== This could cause spurious value errors to appear. ==348947== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==348947== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==348947== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==348947== Warning: set address range perms: large range [0x1351f000, 0x3351e000) (noaccess) ==348947== ==348947== FILE DESCRIPTORS: 14 open (3 std) at exit. ==348947== Open file descriptor 23: /dev/nvidia0 ==348947== at 0x6FB9764: open (open64.c:41) ==348947== by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x125CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x12666B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x12554026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x1255D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x125D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0xB82E023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348947== by 0xB82EFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348947== by 0x1015546A: ??? ==348947== by 0xC38DF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348947== by 0xC369B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348947== by 0xC31ACB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==348947== by 0xC247EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348947== by 0x10143F03: ??? ==348947== by 0xC27C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348947== by 0x8A2F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348947== by 0x89C8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348947== by 0x7308D38: PetscInitialize (pinit.c:924) ==348947== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==348947== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==348947== by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==348947== by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==348947== by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==348947== by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==348947== by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==348947== by 0x11B235: main (TestHdf5Converters.cpp:18) ==348947== ==348947== Open file descriptor 22: /dev/nvidia0 ==348947== at 0x6FB9764: open (open64.c:41) ==348947== by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x125CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x1255407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x1255D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x125D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0xB82E023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348947== by 0xB82EFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348947== by 0x1015546A: ??? ==348947== by 0xC38DF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348947== by 0xC369B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348947== by 0xC31ACB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==348947== by 0xC247EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348947== by 0x10143F03: ??? ==348947== by 0xC27C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348947== by 0x8A2F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348947== by 0x89C8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348947== by 0x7308D38: PetscInitialize (pinit.c:924) ==348947== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==348947== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==348947== by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==348947== by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==348947== by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==348947== by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==348947== by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==348947== by 0x11B235: main (TestHdf5Converters.cpp:18) ==348947== ==348947== Open file descriptor 21: /dev/nvidia0 ==348947== at 0x6FB9764: open (open64.c:41) ==348947== by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x125CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x1255DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x125D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0xB82E023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348947== by 0xB82EFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348947== by 0x1015546A: ??? ==348947== by 0xC38DF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348947== by 0xC369B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348947== by 0xC31ACB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==348947== by 0xC247EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348947== by 0x10143F03: ??? ==348947== by 0xC27C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348947== by 0x8A2F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348947== by 0x89C8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348947== by 0x7308D38: PetscInitialize (pinit.c:924) ==348947== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==348947== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==348947== by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==348947== by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==348947== by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==348947== by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==348947== by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==348947== by 0x11B235: main (TestHdf5Converters.cpp:18) ==348947== ==348947== Open file descriptor 20: /dev/nvidia-uvm ==348947== at 0x6FB9764: open (open64.c:41) ==348947== by 0x12436F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x1241A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0xB82E023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348947== by 0xB82EFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348947== by 0x1015546A: ??? ==348947== by 0xC38DF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348947== by 0xC369B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348947== by 0xC31ACB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==348947== by 0xC247EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348947== by 0x10143F03: ??? ==348947== by 0xC27C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348947== by 0x8A2F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348947== by 0x89C8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348947== by 0x7308D38: PetscInitialize (pinit.c:924) ==348947== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==348947== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==348947== by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==348947== by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==348947== by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==348947== by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==348947== by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==348947== by 0x11B235: main (TestHdf5Converters.cpp:18) ==348947== ==348947== Open file descriptor 19: /dev/nvidiactl ==348947== at 0x6FB9764: open (open64.c:41) ==348947== by 0x125CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x125D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x1241A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==348947== by 0xB82E023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348947== by 0xB82EFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==348947== by 0x1015546A: ??? ==348947== by 0xC38DF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348947== by 0xC369B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==348947== by 0xC31ACB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==348947== by 0xC247EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348947== by 0x10143F03: ??? ==348947== by 0xC27C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348947== by 0x8A2F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348947== by 0x89C8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348947== by 0x7308D38: PetscInitialize (pinit.c:924) ==348947== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==348947== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==348947== by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==348947== by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==348947== by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==348947== by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==348947== by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==348947== by 0x11B235: main (TestHdf5Converters.cpp:18) ==348947== ==348947== Open file descriptor 12: ==348947== at 0x6FBA22D: pipe (pipe.c:29) ==348947== by 0x1014307D: ??? ==348947== by 0xC27C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348947== by 0x8A2F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348947== by 0x89C8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348947== by 0x7308D38: PetscInitialize (pinit.c:924) ==348947== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==348947== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==348947== by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==348947== by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==348947== by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==348947== by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==348947== by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==348947== by 0x11B235: main (TestHdf5Converters.cpp:18) ==348947== ==348947== Open file descriptor 8: /dev/shm/open_mpi.0000 ==348947== at 0x6FBEBCC: __open_nocancel (open64_nocancel.c:39) ==348947== by 0x6F42C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==348947== by 0x6596822: ??? ==348947== by 0x659696F: ??? ==348947== by 0xC3216DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==348947== by 0xC321938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==348947== by 0xC2D7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==348947== by 0xC27C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==348947== by 0x8A2F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348947== by 0x89C8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==348947== by 0x7308D38: PetscInitialize (pinit.c:924) ==348947== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==348947== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==348947== by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==348947== by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==348947== by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==348947== by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==348947== by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==348947== by 0x11B235: main (TestHdf5Converters.cpp:18) ==348947== ==348947== Open file descriptor 116: ==348947== ==348947== ==348947== Open file descriptor 113: ==348947== ==348947== ==348947== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5Converters_valgrind.txt ==348947== ==348947== ==348947== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==348947== ==348947== ==348947== ==348947== HEAP SUMMARY: ==348947== in use at exit: 1,875,748 bytes in 11,738 blocks ==348947== total heap usage: 214,968 allocs, 203,230 frees, 1,589,499,343 bytes allocated ==348947== ==348947== LEAK SUMMARY: ==348947== definitely lost: 0 bytes in 0 blocks ==348947== indirectly lost: 0 bytes in 0 blocks ==348947== possibly lost: 0 bytes in 0 blocks ==348947== still reachable: 24 bytes in 2 blocks ==348947== suppressed: 1,875,724 bytes in 11,736 blocks ==348947== Reachable blocks (those to which a pointer was found) are not shown. ==348947== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==348947== ==348947== For lists of detected and suppressed errors, rerun with: -s ==348947== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 51 from 51)