==349007== Memcheck, a memory error detector ==349007== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==349007== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==349007== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestIncompressibleNonlinearElasticitySolver -malloc_debug -malloc_dump -memory_info ==349007== Parent PID: 347948 ==349007== ==349007== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==349007== This could cause spurious value errors to appear. ==349007== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==349007== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==349007== This could cause spurious value errors to appear. ==349007== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==349007== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==349007== This could cause spurious value errors to appear. ==349007== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==349007== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==349007== This could cause spurious value errors to appear. ==349007== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==349007== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==349007== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==349007== Warning: set address range perms: large range [0x1371f000, 0x3371e000) (noaccess) ==349007== ==349007== FILE DESCRIPTORS: 14 open (3 std) at exit. ==349007== Open file descriptor 23: /dev/nvidia0 ==349007== at 0x8075764: open (open64.c:41) ==349007== by 0x127CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x127CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x12866B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x12754026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x1275D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x127D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x1285FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x1261A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x125648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0xB651023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349007== by 0xB651FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349007== by 0x102D546A: ??? ==349007== by 0xBCA4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349007== by 0xBC80B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349007== by 0xBC31CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==349007== by 0xBB5EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349007== by 0x102C3F03: ??? ==349007== by 0xBB934CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349007== by 0x7897418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349007== by 0x7830D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349007== by 0x64FCD38: PetscInitialize (pinit.c:924) ==349007== by 0x63D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==349007== by 0x63D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==349007== by 0x1506C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==349007== by 0x1497DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==349007== by 0x14CC52: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==349007== by 0x14CAF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==349007== by 0x14D189: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==349007== by 0x147395: main (TestIncompressibleNonlinearElasticitySolver.cpp:19) ==349007== ==349007== Open file descriptor 22: /dev/nvidia0 ==349007== at 0x8075764: open (open64.c:41) ==349007== by 0x127CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x127CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x1275407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x1275D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x127D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x1285FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x1261A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x125648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0xB651023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349007== by 0xB651FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349007== by 0x102D546A: ??? ==349007== by 0xBCA4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349007== by 0xBC80B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349007== by 0xBC31CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==349007== by 0xBB5EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349007== by 0x102C3F03: ??? ==349007== by 0xBB934CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349007== by 0x7897418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349007== by 0x7830D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349007== by 0x64FCD38: PetscInitialize (pinit.c:924) ==349007== by 0x63D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==349007== by 0x63D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==349007== by 0x1506C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==349007== by 0x1497DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==349007== by 0x14CC52: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==349007== by 0x14CAF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==349007== by 0x14D189: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==349007== by 0x147395: main (TestIncompressibleNonlinearElasticitySolver.cpp:19) ==349007== ==349007== Open file descriptor 21: /dev/nvidia0 ==349007== at 0x8075764: open (open64.c:41) ==349007== by 0x127CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x127CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x1275DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x127D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x1285FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x1261A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x125648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0xB651023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349007== by 0xB651FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349007== by 0x102D546A: ??? ==349007== by 0xBCA4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349007== by 0xBC80B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349007== by 0xBC31CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==349007== by 0xBB5EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349007== by 0x102C3F03: ??? ==349007== by 0xBB934CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349007== by 0x7897418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349007== by 0x7830D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349007== by 0x64FCD38: PetscInitialize (pinit.c:924) ==349007== by 0x63D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==349007== by 0x63D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==349007== by 0x1506C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==349007== by 0x1497DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==349007== by 0x14CC52: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==349007== by 0x14CAF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==349007== by 0x14D189: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==349007== by 0x147395: main (TestIncompressibleNonlinearElasticitySolver.cpp:19) ==349007== ==349007== Open file descriptor 20: /dev/nvidia-uvm ==349007== at 0x8075764: open (open64.c:41) ==349007== by 0x12636F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x1261A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x125648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0xB651023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349007== by 0xB651FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349007== by 0x102D546A: ??? ==349007== by 0xBCA4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349007== by 0xBC80B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349007== by 0xBC31CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==349007== by 0xBB5EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349007== by 0x102C3F03: ??? ==349007== by 0xBB934CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349007== by 0x7897418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349007== by 0x7830D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349007== by 0x64FCD38: PetscInitialize (pinit.c:924) ==349007== by 0x63D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==349007== by 0x63D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==349007== by 0x1506C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==349007== by 0x1497DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==349007== by 0x14CC52: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==349007== by 0x14CAF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==349007== by 0x14D189: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==349007== by 0x147395: main (TestIncompressibleNonlinearElasticitySolver.cpp:19) ==349007== ==349007== Open file descriptor 19: /dev/nvidiactl ==349007== at 0x8075764: open (open64.c:41) ==349007== by 0x127CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x127D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x1261A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0x125648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349007== by 0xB651023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349007== by 0xB651FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349007== by 0x102D546A: ??? ==349007== by 0xBCA4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349007== by 0xBC80B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349007== by 0xBC31CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==349007== by 0xBB5EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349007== by 0x102C3F03: ??? ==349007== by 0xBB934CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349007== by 0x7897418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349007== by 0x7830D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349007== by 0x64FCD38: PetscInitialize (pinit.c:924) ==349007== by 0x63D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==349007== by 0x63D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==349007== by 0x1506C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==349007== by 0x1497DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==349007== by 0x14CC52: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==349007== by 0x14CAF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==349007== by 0x14D189: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==349007== by 0x147395: main (TestIncompressibleNonlinearElasticitySolver.cpp:19) ==349007== ==349007== Open file descriptor 12: ==349007== at 0x807622D: pipe (pipe.c:29) ==349007== by 0x102C307D: ??? ==349007== by 0xBB934CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349007== by 0x7897418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349007== by 0x7830D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349007== by 0x64FCD38: PetscInitialize (pinit.c:924) ==349007== by 0x63D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==349007== by 0x63D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==349007== by 0x1506C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==349007== by 0x1497DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==349007== by 0x14CC52: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==349007== by 0x14CAF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==349007== by 0x14D189: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==349007== by 0x147395: main (TestIncompressibleNonlinearElasticitySolver.cpp:19) ==349007== ==349007== Open file descriptor 8: /dev/shm/open_mpi.0000 ==349007== at 0x807ABCC: __open_nocancel (open64_nocancel.c:39) ==349007== by 0x7FFEC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==349007== by 0x7786822: ??? ==349007== by 0x778696F: ??? ==349007== by 0xBC386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==349007== by 0xBC38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==349007== by 0xBBEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==349007== by 0xBB932DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349007== by 0x7897418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349007== by 0x7830D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349007== by 0x64FCD38: PetscInitialize (pinit.c:924) ==349007== by 0x63D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==349007== by 0x63D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==349007== by 0x1506C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==349007== by 0x1497DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==349007== by 0x14CC52: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==349007== by 0x14CAF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==349007== by 0x14D189: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==349007== by 0x147395: main (TestIncompressibleNonlinearElasticitySolver.cpp:19) ==349007== ==349007== Open file descriptor 116: ==349007== ==349007== ==349007== Open file descriptor 113: ==349007== ==349007== ==349007== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestIncompressibleNonlinearElasticitySolver_valgrind.txt ==349007== ==349007== ==349007== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==349007== ==349007== ==349007== ==349007== HEAP SUMMARY: ==349007== in use at exit: 1,875,731 bytes in 11,734 blocks ==349007== total heap usage: 646,769 allocs, 635,035 frees, 1,693,503,900 bytes allocated ==349007== ==349007== LEAK SUMMARY: ==349007== definitely lost: 0 bytes in 0 blocks ==349007== indirectly lost: 0 bytes in 0 blocks ==349007== possibly lost: 0 bytes in 0 blocks ==349007== still reachable: 24 bytes in 2 blocks ==349007== suppressed: 1,875,707 bytes in 11,732 blocks ==349007== Reachable blocks (those to which a pointer was found) are not shown. ==349007== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==349007== ==349007== For lists of detected and suppressed errors, rerun with: -s ==349007== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 49 from 49)