==350209== Memcheck, a memory error detector ==350209== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==350209== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==350209== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithBuskeForces -malloc_debug -malloc_dump -memory_info ==350209== Parent PID: 347948 ==350209== ==350209== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==350209== This could cause spurious value errors to appear. ==350209== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==350209== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==350209== This could cause spurious value errors to appear. ==350209== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==350209== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==350209== This could cause spurious value errors to appear. ==350209== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==350209== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==350209== This could cause spurious value errors to appear. ==350209== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==350209== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==350209== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==350209== Warning: set address range perms: large range [0x1bf1f000, 0x3bf1e000) (noaccess) ==350209== ==350209== FILE DESCRIPTORS: 14 open (3 std) at exit. ==350209== Open file descriptor 23: /dev/nvidia0 ==350209== at 0xEC59764: open (open64.c:41) ==350209== by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AFCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1B066B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AF54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AF5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AFD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x13AEB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==350209== by 0x13AEBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==350209== by 0x18A3246A: ??? ==350209== by 0x1413EF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==350209== by 0x1411AB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==350209== by 0x140CBCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==350209== by 0x13FF8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==350209== by 0x18A20F03: ??? ==350209== by 0x1402D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==350209== by 0x108FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==350209== by 0x10893D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==350209== by 0xF58AD38: PetscInitialize (pinit.c:924) ==350209== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==350209== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==350209== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==350209== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==350209== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==350209== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==350209== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==350209== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) ==350209== ==350209== Open file descriptor 22: /dev/nvidia0 ==350209== at 0xEC59764: open (open64.c:41) ==350209== by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AFCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AF5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AF5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AFD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x13AEB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==350209== by 0x13AEBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==350209== by 0x18A3246A: ??? ==350209== by 0x1413EF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==350209== by 0x1411AB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==350209== by 0x140CBCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==350209== by 0x13FF8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==350209== by 0x18A20F03: ??? ==350209== by 0x1402D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==350209== by 0x108FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==350209== by 0x10893D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==350209== by 0xF58AD38: PetscInitialize (pinit.c:924) ==350209== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==350209== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==350209== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==350209== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==350209== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==350209== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==350209== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==350209== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) ==350209== ==350209== Open file descriptor 21: /dev/nvidia0 ==350209== at 0xEC59764: open (open64.c:41) ==350209== by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AFCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AF5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AFD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x13AEB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==350209== by 0x13AEBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==350209== by 0x18A3246A: ??? ==350209== by 0x1413EF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==350209== by 0x1411AB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==350209== by 0x140CBCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==350209== by 0x13FF8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==350209== by 0x18A20F03: ??? ==350209== by 0x1402D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==350209== by 0x108FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==350209== by 0x10893D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==350209== by 0xF58AD38: PetscInitialize (pinit.c:924) ==350209== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==350209== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==350209== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==350209== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==350209== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==350209== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==350209== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==350209== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) ==350209== ==350209== Open file descriptor 20: /dev/nvidia-uvm ==350209== at 0xEC59764: open (open64.c:41) ==350209== by 0x1AE36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AE1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x13AEB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==350209== by 0x13AEBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==350209== by 0x18A3246A: ??? ==350209== by 0x1413EF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==350209== by 0x1411AB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==350209== by 0x140CBCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==350209== by 0x13FF8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==350209== by 0x18A20F03: ??? ==350209== by 0x1402D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==350209== by 0x108FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==350209== by 0x10893D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==350209== by 0xF58AD38: PetscInitialize (pinit.c:924) ==350209== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==350209== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==350209== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==350209== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==350209== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==350209== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==350209== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==350209== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) ==350209== ==350209== Open file descriptor 19: /dev/nvidiactl ==350209== at 0xEC59764: open (open64.c:41) ==350209== by 0x1AFCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AFD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AE1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==350209== by 0x13AEB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==350209== by 0x13AEBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==350209== by 0x18A3246A: ??? ==350209== by 0x1413EF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==350209== by 0x1411AB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==350209== by 0x140CBCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==350209== by 0x13FF8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==350209== by 0x18A20F03: ??? ==350209== by 0x1402D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==350209== by 0x108FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==350209== by 0x10893D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==350209== by 0xF58AD38: PetscInitialize (pinit.c:924) ==350209== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==350209== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==350209== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==350209== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==350209== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==350209== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==350209== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==350209== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) ==350209== ==350209== Open file descriptor 12: ==350209== at 0xEC5A22D: pipe (pipe.c:29) ==350209== by 0x18A2007D: ??? ==350209== by 0x1402D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==350209== by 0x108FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==350209== by 0x10893D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==350209== by 0xF58AD38: PetscInitialize (pinit.c:924) ==350209== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==350209== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==350209== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==350209== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==350209== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==350209== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==350209== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==350209== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) ==350209== ==350209== Open file descriptor 8: /dev/shm/open_mpi.0000 ==350209== at 0xEC5EBCC: __open_nocancel (open64_nocancel.c:39) ==350209== by 0xEBE2C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==350209== by 0xE4A3822: ??? ==350209== by 0xE4A396F: ??? ==350209== by 0x140D26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==350209== by 0x140D2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==350209== by 0x14088922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==350209== by 0x1402D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==350209== by 0x108FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==350209== by 0x10893D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==350209== by 0xF58AD38: PetscInitialize (pinit.c:924) ==350209== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==350209== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==350209== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==350209== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==350209== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==350209== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==350209== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==350209== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) ==350209== ==350209== Open file descriptor 116: ==350209== ==350209== ==350209== Open file descriptor 113: ==350209== ==350209== ==350209== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithBuskeForces_valgrind.txt ==350209== ==350209== ==350209== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==350209== ==350209== ==350209== ==350209== HEAP SUMMARY: ==350209== in use at exit: 1,875,878 bytes in 11,735 blocks ==350209== total heap usage: 3,627,276 allocs, 3,615,541 frees, 4,682,339,423 bytes allocated ==350209== ==350209== LEAK SUMMARY: ==350209== definitely lost: 0 bytes in 0 blocks ==350209== indirectly lost: 0 bytes in 0 blocks ==350209== possibly lost: 0 bytes in 0 blocks ==350209== still reachable: 56 bytes in 3 blocks ==350209== suppressed: 1,875,822 bytes in 11,732 blocks ==350209== Reachable blocks (those to which a pointer was found) are not shown. ==350209== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==350209== ==350209== For lists of detected and suppressed errors, rerun with: -s ==350209== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 49 from 49)