==349336== Memcheck, a memory error detector ==349336== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==349336== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==349336== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationTime -malloc_debug -malloc_dump -memory_info ==349336== Parent PID: 347948 ==349336== ==349336== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==349336== This could cause spurious value errors to appear. ==349336== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==349336== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==349336== This could cause spurious value errors to appear. ==349336== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==349336== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==349336== This could cause spurious value errors to appear. ==349336== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==349336== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==349336== This could cause spurious value errors to appear. ==349336== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==349336== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==349336== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==349336== Warning: set address range perms: large range [0x1bf1f000, 0x3bf1e000) (noaccess) ==349336== ==349336== FILE DESCRIPTORS: 14 open (3 std) at exit. ==349336== Open file descriptor 23: /dev/nvidia0 ==349336== at 0xCFA6764: open (open64.c:41) ==349336== by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AFCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1B066B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AF54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AF5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AFD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x111E9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349336== by 0x111E9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349336== by 0x18A3146A: ??? ==349336== by 0x140FBF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349336== by 0x140D7B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349336== by 0x14088CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==349336== by 0x13FB5EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349336== by 0x18A1FF03: ??? ==349336== by 0x13FEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349336== by 0x104CE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349336== by 0x10467D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349336== by 0xF15CD38: PetscInitialize (pinit.c:924) ==349336== by 0xCBA4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==349336== by 0xCBA41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==349336== by 0x15B7E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==349336== by 0x155E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==349336== by 0x158E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==349336== by 0x158D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==349336== by 0x1593A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==349336== by 0x154225: main (TestSimulationTime.cpp:19) ==349336== ==349336== Open file descriptor 22: /dev/nvidia0 ==349336== at 0xCFA6764: open (open64.c:41) ==349336== by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AFCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AF5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AF5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AFD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x111E9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349336== by 0x111E9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349336== by 0x18A3146A: ??? ==349336== by 0x140FBF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349336== by 0x140D7B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349336== by 0x14088CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==349336== by 0x13FB5EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349336== by 0x18A1FF03: ??? ==349336== by 0x13FEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349336== by 0x104CE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349336== by 0x10467D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349336== by 0xF15CD38: PetscInitialize (pinit.c:924) ==349336== by 0xCBA4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==349336== by 0xCBA41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==349336== by 0x15B7E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==349336== by 0x155E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==349336== by 0x158E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==349336== by 0x158D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==349336== by 0x1593A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==349336== by 0x154225: main (TestSimulationTime.cpp:19) ==349336== ==349336== Open file descriptor 21: /dev/nvidia0 ==349336== at 0xCFA6764: open (open64.c:41) ==349336== by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AFCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AF5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AFD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x111E9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349336== by 0x111E9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349336== by 0x18A3146A: ??? ==349336== by 0x140FBF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349336== by 0x140D7B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349336== by 0x14088CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==349336== by 0x13FB5EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349336== by 0x18A1FF03: ??? ==349336== by 0x13FEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349336== by 0x104CE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349336== by 0x10467D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349336== by 0xF15CD38: PetscInitialize (pinit.c:924) ==349336== by 0xCBA4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==349336== by 0xCBA41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==349336== by 0x15B7E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==349336== by 0x155E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==349336== by 0x158E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==349336== by 0x158D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==349336== by 0x1593A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==349336== by 0x154225: main (TestSimulationTime.cpp:19) ==349336== ==349336== Open file descriptor 20: /dev/nvidia-uvm ==349336== at 0xCFA6764: open (open64.c:41) ==349336== by 0x1AE36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AE1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x111E9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349336== by 0x111E9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349336== by 0x18A3146A: ??? ==349336== by 0x140FBF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349336== by 0x140D7B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349336== by 0x14088CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==349336== by 0x13FB5EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349336== by 0x18A1FF03: ??? ==349336== by 0x13FEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349336== by 0x104CE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349336== by 0x10467D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349336== by 0xF15CD38: PetscInitialize (pinit.c:924) ==349336== by 0xCBA4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==349336== by 0xCBA41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==349336== by 0x15B7E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==349336== by 0x155E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==349336== by 0x158E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==349336== by 0x158D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==349336== by 0x1593A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==349336== by 0x154225: main (TestSimulationTime.cpp:19) ==349336== ==349336== Open file descriptor 19: /dev/nvidiactl ==349336== at 0xCFA6764: open (open64.c:41) ==349336== by 0x1AFCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AFD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AE1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==349336== by 0x111E9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349336== by 0x111E9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==349336== by 0x18A3146A: ??? ==349336== by 0x140FBF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349336== by 0x140D7B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==349336== by 0x14088CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==349336== by 0x13FB5EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349336== by 0x18A1FF03: ??? ==349336== by 0x13FEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349336== by 0x104CE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349336== by 0x10467D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349336== by 0xF15CD38: PetscInitialize (pinit.c:924) ==349336== by 0xCBA4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==349336== by 0xCBA41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==349336== by 0x15B7E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==349336== by 0x155E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==349336== by 0x158E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==349336== by 0x158D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==349336== by 0x1593A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==349336== by 0x154225: main (TestSimulationTime.cpp:19) ==349336== ==349336== Open file descriptor 12: ==349336== at 0xCFA722D: pipe (pipe.c:29) ==349336== by 0x18A1F07D: ??? ==349336== by 0x13FEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349336== by 0x104CE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349336== by 0x10467D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349336== by 0xF15CD38: PetscInitialize (pinit.c:924) ==349336== by 0xCBA4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==349336== by 0xCBA41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==349336== by 0x15B7E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==349336== by 0x155E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==349336== by 0x158E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==349336== by 0x158D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==349336== by 0x1593A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==349336== by 0x154225: main (TestSimulationTime.cpp:19) ==349336== ==349336== Open file descriptor 8: /dev/shm/open_mpi.0000 ==349336== at 0xCFABBCC: __open_nocancel (open64_nocancel.c:39) ==349336== by 0xCF2FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==349336== by 0xCBD8822: ??? ==349336== by 0xCBD896F: ??? ==349336== by 0x1408F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==349336== by 0x1408F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==349336== by 0x14045922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==349336== by 0x13FEA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==349336== by 0x104CE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349336== by 0x10467D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==349336== by 0xF15CD38: PetscInitialize (pinit.c:924) ==349336== by 0xCBA4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==349336== by 0xCBA41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==349336== by 0x15B7E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==349336== by 0x155E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==349336== by 0x158E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==349336== by 0x158D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==349336== by 0x1593A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==349336== by 0x154225: main (TestSimulationTime.cpp:19) ==349336== ==349336== Open file descriptor 116: ==349336== ==349336== ==349336== Open file descriptor 113: ==349336== ==349336== ==349336== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationTime_valgrind.txt ==349336== ==349336== ==349336== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==349336== ==349336== ==349336== ==349336== HEAP SUMMARY: ==349336== in use at exit: 1,875,915 bytes in 11,738 blocks ==349336== total heap usage: 61,191 allocs, 49,453 frees, 1,533,501,480 bytes allocated ==349336== ==349336== LEAK SUMMARY: ==349336== definitely lost: 0 bytes in 0 blocks ==349336== indirectly lost: 0 bytes in 0 blocks ==349336== possibly lost: 0 bytes in 0 blocks ==349336== still reachable: 24 bytes in 2 blocks ==349336== suppressed: 1,875,891 bytes in 11,736 blocks ==349336== Reachable blocks (those to which a pointer was found) are not shown. ==349336== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==349336== ==349336== For lists of detected and suppressed errors, rerun with: -s ==349336== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)