==409996== Memcheck, a memory error detector ==409996== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==409996== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==409996== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractOdeSystem -malloc_debug -malloc_dump -memory_info ==409996== Parent PID: 409122 ==409996== ==409996== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==409996== This could cause spurious value errors to appear. ==409996== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==409996== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==409996== This could cause spurious value errors to appear. ==409996== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==409996== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==409996== This could cause spurious value errors to appear. ==409996== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==409996== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==409996== This could cause spurious value errors to appear. ==409996== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==409996== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==409996== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==409996== Warning: set address range perms: large range [0x1051f000, 0x3051e000) (noaccess) ==409996== ==409996== FILE DESCRIPTORS: 14 open (3 std) at exit. ==409996== Open file descriptor 23: /dev/nvidia0 ==409996== at 0x640F764: open (open64.c:41) ==409996== by 0xF5CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF5CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF666B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF554026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF55D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF5D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF65FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF41A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF3648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0x87A4023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409996== by 0x87A4FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409996== by 0xB1F746A: ??? ==409996== by 0x8DF7F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409996== by 0x8DD3B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409996== by 0x8D84CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409996== by 0x8CB1EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409996== by 0xB1E5F03: ??? ==409996== by 0x8CE64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409996== by 0x6045418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409996== by 0x5FDED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409996== by 0x4CD5D38: PetscInitialize (pinit.c:924) ==409996== by 0x4B3D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409996== by 0x4B3D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409996== by 0x137AEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==409996== by 0x1315E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409996== by 0x134746: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409996== by 0x1345E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409996== by 0x134C7D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409996== by 0x12EE55: main (TestAbstractOdeSystem.cpp:19) ==409996== ==409996== Open file descriptor 22: /dev/nvidia0 ==409996== at 0x640F764: open (open64.c:41) ==409996== by 0xF5CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF5CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF55407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF55D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF5D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF65FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF41A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF3648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0x87A4023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409996== by 0x87A4FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409996== by 0xB1F746A: ??? ==409996== by 0x8DF7F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409996== by 0x8DD3B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409996== by 0x8D84CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409996== by 0x8CB1EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409996== by 0xB1E5F03: ??? ==409996== by 0x8CE64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409996== by 0x6045418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409996== by 0x5FDED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409996== by 0x4CD5D38: PetscInitialize (pinit.c:924) ==409996== by 0x4B3D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409996== by 0x4B3D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409996== by 0x137AEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==409996== by 0x1315E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409996== by 0x134746: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409996== by 0x1345E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409996== by 0x134C7D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409996== by 0x12EE55: main (TestAbstractOdeSystem.cpp:19) ==409996== ==409996== Open file descriptor 21: /dev/nvidia0 ==409996== at 0x640F764: open (open64.c:41) ==409996== by 0xF5CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF5CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF55DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF5D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF65FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF41A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF3648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0x87A4023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409996== by 0x87A4FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409996== by 0xB1F746A: ??? ==409996== by 0x8DF7F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409996== by 0x8DD3B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409996== by 0x8D84CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409996== by 0x8CB1EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409996== by 0xB1E5F03: ??? ==409996== by 0x8CE64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409996== by 0x6045418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409996== by 0x5FDED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409996== by 0x4CD5D38: PetscInitialize (pinit.c:924) ==409996== by 0x4B3D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409996== by 0x4B3D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409996== by 0x137AEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==409996== by 0x1315E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409996== by 0x134746: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409996== by 0x1345E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409996== by 0x134C7D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409996== by 0x12EE55: main (TestAbstractOdeSystem.cpp:19) ==409996== ==409996== Open file descriptor 20: /dev/nvidia-uvm ==409996== at 0x640F764: open (open64.c:41) ==409996== by 0xF436F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF41A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF3648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0x87A4023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409996== by 0x87A4FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409996== by 0xB1F746A: ??? ==409996== by 0x8DF7F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409996== by 0x8DD3B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409996== by 0x8D84CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409996== by 0x8CB1EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409996== by 0xB1E5F03: ??? ==409996== by 0x8CE64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409996== by 0x6045418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409996== by 0x5FDED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409996== by 0x4CD5D38: PetscInitialize (pinit.c:924) ==409996== by 0x4B3D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409996== by 0x4B3D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409996== by 0x137AEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==409996== by 0x1315E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409996== by 0x134746: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409996== by 0x1345E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409996== by 0x134C7D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409996== by 0x12EE55: main (TestAbstractOdeSystem.cpp:19) ==409996== ==409996== Open file descriptor 19: /dev/nvidiactl ==409996== at 0x640F764: open (open64.c:41) ==409996== by 0xF5CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF5D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF41A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0xF3648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409996== by 0x87A4023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409996== by 0x87A4FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409996== by 0xB1F746A: ??? ==409996== by 0x8DF7F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409996== by 0x8DD3B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409996== by 0x8D84CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409996== by 0x8CB1EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409996== by 0xB1E5F03: ??? ==409996== by 0x8CE64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409996== by 0x6045418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409996== by 0x5FDED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409996== by 0x4CD5D38: PetscInitialize (pinit.c:924) ==409996== by 0x4B3D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409996== by 0x4B3D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409996== by 0x137AEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==409996== by 0x1315E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409996== by 0x134746: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409996== by 0x1345E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409996== by 0x134C7D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409996== by 0x12EE55: main (TestAbstractOdeSystem.cpp:19) ==409996== ==409996== Open file descriptor 12: ==409996== at 0x641022D: pipe (pipe.c:29) ==409996== by 0xB1E507D: ??? ==409996== by 0x8CE64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409996== by 0x6045418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409996== by 0x5FDED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409996== by 0x4CD5D38: PetscInitialize (pinit.c:924) ==409996== by 0x4B3D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409996== by 0x4B3D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409996== by 0x137AEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==409996== by 0x1315E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409996== by 0x134746: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409996== by 0x1345E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409996== by 0x134C7D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409996== by 0x12EE55: main (TestAbstractOdeSystem.cpp:19) ==409996== ==409996== Open file descriptor 8: /dev/shm/open_mpi.0000 ==409996== at 0x6414BCC: __open_nocancel (open64_nocancel.c:39) ==409996== by 0x6398C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==409996== by 0x4B72822: ??? ==409996== by 0x4B7296F: ??? ==409996== by 0x8D8B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409996== by 0x8D8B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409996== by 0x8D41922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409996== by 0x8CE62DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409996== by 0x6045418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409996== by 0x5FDED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409996== by 0x4CD5D38: PetscInitialize (pinit.c:924) ==409996== by 0x4B3D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409996== by 0x4B3D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409996== by 0x137AEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==409996== by 0x1315E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409996== by 0x134746: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409996== by 0x1345E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409996== by 0x134C7D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409996== by 0x12EE55: main (TestAbstractOdeSystem.cpp:19) ==409996== ==409996== Open file descriptor 116: ==409996== ==409996== ==409996== Open file descriptor 113: ==409996== ==409996== ==409996== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractOdeSystem_valgrind.txt ==409996== ==409996== ==409996== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==409996== ==409996== ==409996== ==409996== HEAP SUMMARY: ==409996== in use at exit: 1,875,271 bytes in 11,738 blocks ==409996== total heap usage: 54,491 allocs, 42,753 frees, 1,532,963,828 bytes allocated ==409996== ==409996== LEAK SUMMARY: ==409996== definitely lost: 0 bytes in 0 blocks ==409996== indirectly lost: 0 bytes in 0 blocks ==409996== possibly lost: 0 bytes in 0 blocks ==409996== still reachable: 24 bytes in 2 blocks ==409996== suppressed: 1,875,247 bytes in 11,736 blocks ==409996== Reachable blocks (those to which a pointer was found) are not shown. ==409996== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==409996== ==409996== For lists of detected and suppressed errors, rerun with: -s ==409996== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 50 from 50)