==425674== Memcheck, a memory error detector ==425674== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==425674== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==425674== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainDistributedMesh -malloc_debug -malloc_dump -memory_info ==425674== Parent PID: 409122 ==425674== ==425674== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==425674== This could cause spurious value errors to appear. ==425674== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==425674== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==425674== This could cause spurious value errors to appear. ==425674== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==425674== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==425674== This could cause spurious value errors to appear. ==425674== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==425674== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==425674== This could cause spurious value errors to appear. ==425674== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==425674== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==425674== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==425674== Warning: set address range perms: large range [0x1771f000, 0x3771e000) (noaccess) ==425674== ==425674== FILE DESCRIPTORS: 14 open (3 std) at exit. ==425674== Open file descriptor 23: /dev/nvidia0 ==425674== at 0xBC06764: open (open64.c:41) ==425674== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x167CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x16866B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x16754026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x1675D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x167D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0xF5A9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425674== by 0xF5A9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425674== by 0x1433146A: ??? ==425674== by 0xFBFAF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425674== by 0xFBD6B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425674== by 0xFB87CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425674== by 0xFAB4EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425674== by 0x1431FF03: ??? ==425674== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425674== by 0xB4F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425674== by 0xB48ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425674== by 0xA15AD38: PetscInitialize (pinit.c:924) ==425674== by 0xA0312DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425674== by 0xA03132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425674== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==425674== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425674== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425674== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425674== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425674== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) ==425674== ==425674== Open file descriptor 22: /dev/nvidia0 ==425674== at 0xBC06764: open (open64.c:41) ==425674== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x167CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x1675407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x1675D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x167D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0xF5A9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425674== by 0xF5A9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425674== by 0x1433146A: ??? ==425674== by 0xFBFAF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425674== by 0xFBD6B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425674== by 0xFB87CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425674== by 0xFAB4EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425674== by 0x1431FF03: ??? ==425674== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425674== by 0xB4F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425674== by 0xB48ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425674== by 0xA15AD38: PetscInitialize (pinit.c:924) ==425674== by 0xA0312DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425674== by 0xA03132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425674== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==425674== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425674== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425674== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425674== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425674== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) ==425674== ==425674== Open file descriptor 21: /dev/nvidia0 ==425674== at 0xBC06764: open (open64.c:41) ==425674== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x167CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x1675DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x167D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0xF5A9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425674== by 0xF5A9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425674== by 0x1433146A: ??? ==425674== by 0xFBFAF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425674== by 0xFBD6B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425674== by 0xFB87CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425674== by 0xFAB4EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425674== by 0x1431FF03: ??? ==425674== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425674== by 0xB4F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425674== by 0xB48ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425674== by 0xA15AD38: PetscInitialize (pinit.c:924) ==425674== by 0xA0312DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425674== by 0xA03132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425674== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==425674== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425674== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425674== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425674== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425674== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) ==425674== ==425674== Open file descriptor 20: /dev/nvidia-uvm ==425674== at 0xBC06764: open (open64.c:41) ==425674== by 0x16636F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x1661A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0xF5A9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425674== by 0xF5A9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425674== by 0x1433146A: ??? ==425674== by 0xFBFAF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425674== by 0xFBD6B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425674== by 0xFB87CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425674== by 0xFAB4EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425674== by 0x1431FF03: ??? ==425674== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425674== by 0xB4F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425674== by 0xB48ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425674== by 0xA15AD38: PetscInitialize (pinit.c:924) ==425674== by 0xA0312DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425674== by 0xA03132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425674== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==425674== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425674== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425674== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425674== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425674== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) ==425674== ==425674== Open file descriptor 19: /dev/nvidiactl ==425674== at 0xBC06764: open (open64.c:41) ==425674== by 0x167CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x167D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x1661A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425674== by 0xF5A9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425674== by 0xF5A9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425674== by 0x1433146A: ??? ==425674== by 0xFBFAF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425674== by 0xFBD6B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425674== by 0xFB87CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425674== by 0xFAB4EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425674== by 0x1431FF03: ??? ==425674== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425674== by 0xB4F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425674== by 0xB48ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425674== by 0xA15AD38: PetscInitialize (pinit.c:924) ==425674== by 0xA0312DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425674== by 0xA03132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425674== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==425674== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425674== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425674== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425674== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425674== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) ==425674== ==425674== Open file descriptor 12: ==425674== at 0xBC0722D: pipe (pipe.c:29) ==425674== by 0x1431F07D: ??? ==425674== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425674== by 0xB4F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425674== by 0xB48ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425674== by 0xA15AD38: PetscInitialize (pinit.c:924) ==425674== by 0xA0312DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425674== by 0xA03132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425674== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==425674== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425674== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425674== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425674== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425674== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) ==425674== ==425674== Open file descriptor 8: /dev/shm/open_mpi.0000 ==425674== at 0xBC0BBCC: __open_nocancel (open64_nocancel.c:39) ==425674== by 0xBB8FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==425674== by 0xB3E4822: ??? ==425674== by 0xB3E496F: ??? ==425674== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425674== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425674== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425674== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425674== by 0xB4F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425674== by 0xB48ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425674== by 0xA15AD38: PetscInitialize (pinit.c:924) ==425674== by 0xA0312DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425674== by 0xA03132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425674== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==425674== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425674== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425674== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425674== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425674== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) ==425674== ==425674== Open file descriptor 116: ==425674== ==425674== ==425674== Open file descriptor 113: ==425674== ==425674== ==425674== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainDistributedMesh_valgrind.txt ==425674== ==425674== ==425674== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==425674== ==425674== ==425674== ==425674== HEAP SUMMARY: ==425674== in use at exit: 1,876,367 bytes in 11,748 blocks ==425674== total heap usage: 436,830 allocs, 425,082 frees, 1,632,022,419 bytes allocated ==425674== ==425674== LEAK SUMMARY: ==425674== definitely lost: 0 bytes in 0 blocks ==425674== indirectly lost: 0 bytes in 0 blocks ==425674== possibly lost: 0 bytes in 0 blocks ==425674== still reachable: 24 bytes in 2 blocks ==425674== suppressed: 1,876,343 bytes in 11,746 blocks ==425674== Reachable blocks (those to which a pointer was found) are not shown. ==425674== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==425674== ==425674== For lists of detected and suppressed errors, rerun with: -s ==425674== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 71 from 54)