==425689== Memcheck, a memory error detector ==425689== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==425689== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==425689== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainTissue -malloc_debug -malloc_dump -memory_info ==425689== Parent PID: 409122 ==425689== ==425689== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==425689== This could cause spurious value errors to appear. ==425689== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==425689== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==425689== This could cause spurious value errors to appear. ==425689== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==425689== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==425689== This could cause spurious value errors to appear. ==425689== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==425689== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==425689== This could cause spurious value errors to appear. ==425689== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==425689== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==425689== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==425689== Warning: set address range perms: large range [0x1771f000, 0x3771e000) (noaccess) ==425689== ==425689== FILE DESCRIPTORS: 14 open (3 std) at exit. ==425689== Open file descriptor 23: /dev/nvidia0 ==425689== at 0xBBA0764: open (open64.c:41) ==425689== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x167CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x16866B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x16754026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x1675D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x167D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0xF5A9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425689== by 0xF5A9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425689== by 0x1433146A: ??? ==425689== by 0xFC47F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425689== by 0xFC23B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425689== by 0xFBD4CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425689== by 0xFB01EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425689== by 0x1431FF03: ??? ==425689== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425689== by 0xBF1D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425689== by 0xBEB6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425689== by 0xA256D38: PetscInitialize (pinit.c:924) ==425689== by 0xA0C02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425689== by 0xA0C032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425689== by 0x1397A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==425689== by 0x133EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425689== by 0x136612: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425689== by 0x13650E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425689== by 0x136B21: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425689== by 0x1326C5: main (TestBidomainTissue.cpp:18) ==425689== ==425689== Open file descriptor 22: /dev/nvidia0 ==425689== at 0xBBA0764: open (open64.c:41) ==425689== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x167CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x1675407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x1675D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x167D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0xF5A9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425689== by 0xF5A9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425689== by 0x1433146A: ??? ==425689== by 0xFC47F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425689== by 0xFC23B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425689== by 0xFBD4CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425689== by 0xFB01EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425689== by 0x1431FF03: ??? ==425689== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425689== by 0xBF1D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425689== by 0xBEB6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425689== by 0xA256D38: PetscInitialize (pinit.c:924) ==425689== by 0xA0C02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425689== by 0xA0C032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425689== by 0x1397A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==425689== by 0x133EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425689== by 0x136612: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425689== by 0x13650E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425689== by 0x136B21: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425689== by 0x1326C5: main (TestBidomainTissue.cpp:18) ==425689== ==425689== Open file descriptor 21: /dev/nvidia0 ==425689== at 0xBBA0764: open (open64.c:41) ==425689== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x167CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x1675DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x167D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0xF5A9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425689== by 0xF5A9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425689== by 0x1433146A: ??? ==425689== by 0xFC47F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425689== by 0xFC23B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425689== by 0xFBD4CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425689== by 0xFB01EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425689== by 0x1431FF03: ??? ==425689== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425689== by 0xBF1D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425689== by 0xBEB6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425689== by 0xA256D38: PetscInitialize (pinit.c:924) ==425689== by 0xA0C02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425689== by 0xA0C032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425689== by 0x1397A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==425689== by 0x133EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425689== by 0x136612: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425689== by 0x13650E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425689== by 0x136B21: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425689== by 0x1326C5: main (TestBidomainTissue.cpp:18) ==425689== ==425689== Open file descriptor 20: /dev/nvidia-uvm ==425689== at 0xBBA0764: open (open64.c:41) ==425689== by 0x16636F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x1661A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0xF5A9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425689== by 0xF5A9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425689== by 0x1433146A: ??? ==425689== by 0xFC47F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425689== by 0xFC23B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425689== by 0xFBD4CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425689== by 0xFB01EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425689== by 0x1431FF03: ??? ==425689== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425689== by 0xBF1D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425689== by 0xBEB6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425689== by 0xA256D38: PetscInitialize (pinit.c:924) ==425689== by 0xA0C02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425689== by 0xA0C032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425689== by 0x1397A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==425689== by 0x133EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425689== by 0x136612: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425689== by 0x13650E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425689== by 0x136B21: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425689== by 0x1326C5: main (TestBidomainTissue.cpp:18) ==425689== ==425689== Open file descriptor 19: /dev/nvidiactl ==425689== at 0xBBA0764: open (open64.c:41) ==425689== by 0x167CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x167D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x1661A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425689== by 0xF5A9023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425689== by 0xF5A9FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425689== by 0x1433146A: ??? ==425689== by 0xFC47F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425689== by 0xFC23B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425689== by 0xFBD4CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425689== by 0xFB01EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425689== by 0x1431FF03: ??? ==425689== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425689== by 0xBF1D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425689== by 0xBEB6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425689== by 0xA256D38: PetscInitialize (pinit.c:924) ==425689== by 0xA0C02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425689== by 0xA0C032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425689== by 0x1397A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==425689== by 0x133EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425689== by 0x136612: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425689== by 0x13650E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425689== by 0x136B21: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425689== by 0x1326C5: main (TestBidomainTissue.cpp:18) ==425689== ==425689== Open file descriptor 12: ==425689== at 0xBBA122D: pipe (pipe.c:29) ==425689== by 0x1431F07D: ??? ==425689== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425689== by 0xBF1D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425689== by 0xBEB6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425689== by 0xA256D38: PetscInitialize (pinit.c:924) ==425689== by 0xA0C02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425689== by 0xA0C032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425689== by 0x1397A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==425689== by 0x133EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425689== by 0x136612: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425689== by 0x13650E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425689== by 0x136B21: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425689== by 0x1326C5: main (TestBidomainTissue.cpp:18) ==425689== ==425689== Open file descriptor 8: /dev/shm/open_mpi.0000 ==425689== at 0xBBA5BCC: __open_nocancel (open64_nocancel.c:39) ==425689== by 0xBB29C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==425689== by 0xA0F5822: ??? ==425689== by 0xA0F596F: ??? ==425689== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425689== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425689== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425689== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425689== by 0xBF1D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425689== by 0xBEB6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425689== by 0xA256D38: PetscInitialize (pinit.c:924) ==425689== by 0xA0C02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425689== by 0xA0C032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425689== by 0x1397A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==425689== by 0x133EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425689== by 0x136612: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425689== by 0x13650E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425689== by 0x136B21: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425689== by 0x1326C5: main (TestBidomainTissue.cpp:18) ==425689== ==425689== Open file descriptor 116: ==425689== ==425689== ==425689== Open file descriptor 113: ==425689== ==425689== ==425689== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainTissue_valgrind.txt ==425689== ==425689== ==425689== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==425689== ==425689== ==425689== ==425689== HEAP SUMMARY: ==425689== in use at exit: 1,875,878 bytes in 11,738 blocks ==425689== total heap usage: 200,611 allocs, 188,873 frees, 1,575,836,756 bytes allocated ==425689== ==425689== LEAK SUMMARY: ==425689== definitely lost: 0 bytes in 0 blocks ==425689== indirectly lost: 0 bytes in 0 blocks ==425689== possibly lost: 0 bytes in 0 blocks ==425689== still reachable: 24 bytes in 2 blocks ==425689== suppressed: 1,875,854 bytes in 11,736 blocks ==425689== Reachable blocks (those to which a pointer was found) are not shown. ==425689== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==425689== ==425689== For lists of detected and suppressed errors, rerun with: -s ==425689== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)