==410412== Memcheck, a memory error detector ==410412== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==410412== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==410412== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCell -malloc_debug -malloc_dump -memory_info ==410412== Parent PID: 409122 ==410412== ==410412== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==410412== This could cause spurious value errors to appear. ==410412== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==410412== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==410412== This could cause spurious value errors to appear. ==410412== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==410412== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==410412== This could cause spurious value errors to appear. ==410412== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==410412== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==410412== This could cause spurious value errors to appear. ==410412== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==410412== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==410412== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==410412== Warning: set address range perms: large range [0x1cb1f000, 0x3cb1e000) (noaccess) ==410412== ==410412== FILE DESCRIPTORS: 14 open (3 std) at exit. ==410412== Open file descriptor 23: /dev/nvidia0 ==410412== at 0xED16764: open (open64.c:41) ==410412== by 0x1BBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BBCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BC66B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BB54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BB5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BBD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x136BE023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410412== by 0x136BEFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410412== by 0x196B746A: ??? ==410412== by 0x13D11F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410412== by 0x13CEDB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410412== by 0x13C9ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410412== by 0x13BCBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410412== by 0x196A5F03: ??? ==410412== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410412== by 0xE966418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410412== by 0xE8FFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410412== by 0xD5CBD38: PetscInitialize (pinit.c:924) ==410412== by 0xD4A02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410412== by 0xD4A032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410412== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==410412== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410412== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410412== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410412== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410412== by 0x1222F5: main (TestCell.cpp:19) ==410412== ==410412== Open file descriptor 22: /dev/nvidia0 ==410412== at 0xED16764: open (open64.c:41) ==410412== by 0x1BBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BBCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BB5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BB5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BBD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x136BE023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410412== by 0x136BEFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410412== by 0x196B746A: ??? ==410412== by 0x13D11F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410412== by 0x13CEDB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410412== by 0x13C9ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410412== by 0x13BCBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410412== by 0x196A5F03: ??? ==410412== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410412== by 0xE966418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410412== by 0xE8FFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410412== by 0xD5CBD38: PetscInitialize (pinit.c:924) ==410412== by 0xD4A02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410412== by 0xD4A032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410412== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==410412== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410412== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410412== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410412== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410412== by 0x1222F5: main (TestCell.cpp:19) ==410412== ==410412== Open file descriptor 21: /dev/nvidia0 ==410412== at 0xED16764: open (open64.c:41) ==410412== by 0x1BBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BBCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BB5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BBD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x136BE023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410412== by 0x136BEFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410412== by 0x196B746A: ??? ==410412== by 0x13D11F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410412== by 0x13CEDB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410412== by 0x13C9ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410412== by 0x13BCBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410412== by 0x196A5F03: ??? ==410412== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410412== by 0xE966418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410412== by 0xE8FFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410412== by 0xD5CBD38: PetscInitialize (pinit.c:924) ==410412== by 0xD4A02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410412== by 0xD4A032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410412== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==410412== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410412== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410412== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410412== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410412== by 0x1222F5: main (TestCell.cpp:19) ==410412== ==410412== Open file descriptor 20: /dev/nvidia-uvm ==410412== at 0xED16764: open (open64.c:41) ==410412== by 0x1BA36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BA1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x136BE023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410412== by 0x136BEFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410412== by 0x196B746A: ??? ==410412== by 0x13D11F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410412== by 0x13CEDB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410412== by 0x13C9ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410412== by 0x13BCBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410412== by 0x196A5F03: ??? ==410412== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410412== by 0xE966418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410412== by 0xE8FFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410412== by 0xD5CBD38: PetscInitialize (pinit.c:924) ==410412== by 0xD4A02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410412== by 0xD4A032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410412== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==410412== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410412== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410412== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410412== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410412== by 0x1222F5: main (TestCell.cpp:19) ==410412== ==410412== Open file descriptor 19: /dev/nvidiactl ==410412== at 0xED16764: open (open64.c:41) ==410412== by 0x1BBCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BBD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1BA1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410412== by 0x136BE023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410412== by 0x136BEFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410412== by 0x196B746A: ??? ==410412== by 0x13D11F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410412== by 0x13CEDB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410412== by 0x13C9ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410412== by 0x13BCBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410412== by 0x196A5F03: ??? ==410412== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410412== by 0xE966418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410412== by 0xE8FFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410412== by 0xD5CBD38: PetscInitialize (pinit.c:924) ==410412== by 0xD4A02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410412== by 0xD4A032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410412== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==410412== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410412== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410412== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410412== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410412== by 0x1222F5: main (TestCell.cpp:19) ==410412== ==410412== Open file descriptor 12: ==410412== at 0xED1722D: pipe (pipe.c:29) ==410412== by 0x196A507D: ??? ==410412== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410412== by 0xE966418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410412== by 0xE8FFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410412== by 0xD5CBD38: PetscInitialize (pinit.c:924) ==410412== by 0xD4A02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410412== by 0xD4A032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410412== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==410412== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410412== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410412== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410412== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410412== by 0x1222F5: main (TestCell.cpp:19) ==410412== ==410412== Open file descriptor 8: /dev/shm/open_mpi.0000 ==410412== at 0xED1BBCC: __open_nocancel (open64_nocancel.c:39) ==410412== by 0xEC9FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==410412== by 0xE855822: ??? ==410412== by 0xE85596F: ??? ==410412== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410412== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410412== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410412== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410412== by 0xE966418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410412== by 0xE8FFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410412== by 0xD5CBD38: PetscInitialize (pinit.c:924) ==410412== by 0xD4A02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410412== by 0xD4A032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410412== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==410412== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410412== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410412== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410412== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410412== by 0x1222F5: main (TestCell.cpp:19) ==410412== ==410412== Open file descriptor 116: ==410412== ==410412== ==410412== Open file descriptor 113: ==410412== ==410412== ==410412== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCell_valgrind.txt ==410412== ==410412== ==410412== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==410412== ==410412== ==410412== ==410412== HEAP SUMMARY: ==410412== in use at exit: 1,875,927 bytes in 11,736 blocks ==410412== total heap usage: 5,192,047 allocs, 5,180,311 frees, 2,013,818,955 bytes allocated ==410412== ==410412== LEAK SUMMARY: ==410412== definitely lost: 0 bytes in 0 blocks ==410412== indirectly lost: 0 bytes in 0 blocks ==410412== possibly lost: 0 bytes in 0 blocks ==410412== still reachable: 184 bytes in 4 blocks ==410412== suppressed: 1,875,743 bytes in 11,732 blocks ==410412== Reachable blocks (those to which a pointer was found) are not shown. ==410412== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==410412== ==410412== For lists of detected and suppressed errors, rerun with: -s ==410412== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 49 from 49)