==425813== Memcheck, a memory error detector ==425813== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==425813== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==425813== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestFibreWriter -malloc_debug -malloc_dump -memory_info ==425813== Parent PID: 409122 ==425813== ==425813== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==425813== This could cause spurious value errors to appear. ==425813== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==425813== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==425813== This could cause spurious value errors to appear. ==425813== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==425813== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==425813== This could cause spurious value errors to appear. ==425813== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==425813== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==425813== This could cause spurious value errors to appear. ==425813== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==425813== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==425813== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==425813== Warning: set address range perms: large range [0x1771f000, 0x3771e000) (noaccess) ==425813== ==425813== FILE DESCRIPTORS: 14 open (3 std) at exit. ==425813== Open file descriptor 23: /dev/nvidia0 ==425813== at 0x9A2A764: open (open64.c:41) ==425813== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x167CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x16866B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x16754026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x1675D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x167D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0xE8DD023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425813== by 0xE8DDFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425813== by 0x1433346A: ??? ==425813== by 0xEF32F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425813== by 0xEF0EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425813== by 0xEEBFCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425813== by 0xEDEAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425813== by 0x14321F03: ??? ==425813== by 0xEE1F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425813== by 0x9660418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425813== by 0x95F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425813== by 0x82C5D38: PetscInitialize (pinit.c:924) ==425813== by 0x819A2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425813== by 0x819A32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425813== by 0x11BA8B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==425813== by 0x1155D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425813== by 0x117F74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425813== by 0x117E6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425813== by 0x118483: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425813== by 0x113DD5: main (TestFibreWriter.cpp:18) ==425813== ==425813== Open file descriptor 22: /dev/nvidia0 ==425813== at 0x9A2A764: open (open64.c:41) ==425813== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x167CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x1675407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x1675D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x167D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0xE8DD023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425813== by 0xE8DDFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425813== by 0x1433346A: ??? ==425813== by 0xEF32F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425813== by 0xEF0EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425813== by 0xEEBFCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425813== by 0xEDEAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425813== by 0x14321F03: ??? ==425813== by 0xEE1F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425813== by 0x9660418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425813== by 0x95F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425813== by 0x82C5D38: PetscInitialize (pinit.c:924) ==425813== by 0x819A2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425813== by 0x819A32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425813== by 0x11BA8B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==425813== by 0x1155D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425813== by 0x117F74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425813== by 0x117E6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425813== by 0x118483: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425813== by 0x113DD5: main (TestFibreWriter.cpp:18) ==425813== ==425813== Open file descriptor 21: /dev/nvidia0 ==425813== at 0x9A2A764: open (open64.c:41) ==425813== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x167CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x1675DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x167D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0xE8DD023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425813== by 0xE8DDFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425813== by 0x1433346A: ??? ==425813== by 0xEF32F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425813== by 0xEF0EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425813== by 0xEEBFCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425813== by 0xEDEAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425813== by 0x14321F03: ??? ==425813== by 0xEE1F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425813== by 0x9660418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425813== by 0x95F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425813== by 0x82C5D38: PetscInitialize (pinit.c:924) ==425813== by 0x819A2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425813== by 0x819A32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425813== by 0x11BA8B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==425813== by 0x1155D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425813== by 0x117F74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425813== by 0x117E6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425813== by 0x118483: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425813== by 0x113DD5: main (TestFibreWriter.cpp:18) ==425813== ==425813== Open file descriptor 20: /dev/nvidia-uvm ==425813== at 0x9A2A764: open (open64.c:41) ==425813== by 0x16636F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x1661A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0xE8DD023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425813== by 0xE8DDFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425813== by 0x1433346A: ??? ==425813== by 0xEF32F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425813== by 0xEF0EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425813== by 0xEEBFCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425813== by 0xEDEAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425813== by 0x14321F03: ??? ==425813== by 0xEE1F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425813== by 0x9660418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425813== by 0x95F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425813== by 0x82C5D38: PetscInitialize (pinit.c:924) ==425813== by 0x819A2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425813== by 0x819A32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425813== by 0x11BA8B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==425813== by 0x1155D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425813== by 0x117F74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425813== by 0x117E6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425813== by 0x118483: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425813== by 0x113DD5: main (TestFibreWriter.cpp:18) ==425813== ==425813== Open file descriptor 19: /dev/nvidiactl ==425813== at 0x9A2A764: open (open64.c:41) ==425813== by 0x167CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x167D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x1661A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==425813== by 0xE8DD023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425813== by 0xE8DDFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==425813== by 0x1433346A: ??? ==425813== by 0xEF32F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425813== by 0xEF0EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==425813== by 0xEEBFCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425813== by 0xEDEAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425813== by 0x14321F03: ??? ==425813== by 0xEE1F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425813== by 0x9660418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425813== by 0x95F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425813== by 0x82C5D38: PetscInitialize (pinit.c:924) ==425813== by 0x819A2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425813== by 0x819A32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425813== by 0x11BA8B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==425813== by 0x1155D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425813== by 0x117F74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425813== by 0x117E6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425813== by 0x118483: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425813== by 0x113DD5: main (TestFibreWriter.cpp:18) ==425813== ==425813== Open file descriptor 12: ==425813== at 0x9A2B22D: pipe (pipe.c:29) ==425813== by 0x1432107D: ??? ==425813== by 0xEE1F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425813== by 0x9660418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425813== by 0x95F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425813== by 0x82C5D38: PetscInitialize (pinit.c:924) ==425813== by 0x819A2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425813== by 0x819A32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425813== by 0x11BA8B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==425813== by 0x1155D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425813== by 0x117F74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425813== by 0x117E6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425813== by 0x118483: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425813== by 0x113DD5: main (TestFibreWriter.cpp:18) ==425813== ==425813== Open file descriptor 8: /dev/shm/open_mpi.0000 ==425813== at 0x9A2FBCC: __open_nocancel (open64_nocancel.c:39) ==425813== by 0x99B3C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==425813== by 0x954F822: ??? ==425813== by 0x954F96F: ??? ==425813== by 0xEEC66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425813== by 0xEEC6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425813== by 0xEE7C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==425813== by 0xEE1F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==425813== by 0x9660418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425813== by 0x95F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==425813== by 0x82C5D38: PetscInitialize (pinit.c:924) ==425813== by 0x819A2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==425813== by 0x819A32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==425813== by 0x11BA8B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==425813== by 0x1155D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==425813== by 0x117F74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==425813== by 0x117E6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==425813== by 0x118483: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==425813== by 0x113DD5: main (TestFibreWriter.cpp:18) ==425813== ==425813== Open file descriptor 116: ==425813== ==425813== ==425813== Open file descriptor 113: ==425813== ==425813== ==425813== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFibreWriter_valgrind.txt ==425813== ==425813== ==425813== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==425813== ==425813== ==425813== ==425813== HEAP SUMMARY: ==425813== in use at exit: 1,875,939 bytes in 11,738 blocks ==425813== total heap usage: 65,903 allocs, 54,165 frees, 1,534,377,191 bytes allocated ==425813== ==425813== LEAK SUMMARY: ==425813== definitely lost: 0 bytes in 0 blocks ==425813== indirectly lost: 0 bytes in 0 blocks ==425813== possibly lost: 0 bytes in 0 blocks ==425813== still reachable: 24 bytes in 2 blocks ==425813== suppressed: 1,875,915 bytes in 11,736 blocks ==425813== Reachable blocks (those to which a pointer was found) are not shown. ==425813== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==425813== ==425813== For lists of detected and suppressed errors, rerun with: -s ==425813== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)