==409197== Memcheck, a memory error detector ==409197== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==409197== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==409197== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFileComparison -malloc_debug -malloc_dump -memory_info ==409197== Parent PID: 409122 ==409197== ==409197== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==409197== This could cause spurious value errors to appear. ==409197== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==409197== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==409197== This could cause spurious value errors to appear. ==409197== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==409197== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==409197== This could cause spurious value errors to appear. ==409197== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==409197== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==409197== This could cause spurious value errors to appear. ==409197== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==409197== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==409197== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==409197== Warning: set address range perms: large range [0x1011f000, 0x3011e000) (noaccess) ==409197== ==409197== FILE DESCRIPTORS: 14 open (3 std) at exit. ==409197== Open file descriptor 23: /dev/nvidia0 ==409197== at 0x4CB9764: open (open64.c:41) ==409197== by 0xF1CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF1CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF266B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF154026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF15D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF1D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF25FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF01A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0x8481023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409197== by 0x8481FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409197== by 0xAEB746A: ??? ==409197== by 0x8AD4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409197== by 0x8AB0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409197== by 0x8A61CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409197== by 0x898EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409197== by 0xAEA5F03: ??? ==409197== by 0x89C34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409197== by 0x6276418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409197== by 0x620FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409197== by 0x4F06D38: PetscInitialize (pinit.c:924) ==409197== by 0x48FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409197== by 0x48FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409197== by 0x11886E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==409197== by 0x112333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409197== by 0x114C32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409197== by 0x114B2D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409197== by 0x115141: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409197== by 0x110B35: main (TestFileComparison.cpp:18) ==409197== ==409197== Open file descriptor 22: /dev/nvidia0 ==409197== at 0x4CB9764: open (open64.c:41) ==409197== by 0xF1CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF1CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF15407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF15D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF1D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF25FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF01A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0x8481023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409197== by 0x8481FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409197== by 0xAEB746A: ??? ==409197== by 0x8AD4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409197== by 0x8AB0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409197== by 0x8A61CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409197== by 0x898EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409197== by 0xAEA5F03: ??? ==409197== by 0x89C34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409197== by 0x6276418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409197== by 0x620FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409197== by 0x4F06D38: PetscInitialize (pinit.c:924) ==409197== by 0x48FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409197== by 0x48FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409197== by 0x11886E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==409197== by 0x112333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409197== by 0x114C32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409197== by 0x114B2D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409197== by 0x115141: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409197== by 0x110B35: main (TestFileComparison.cpp:18) ==409197== ==409197== Open file descriptor 21: /dev/nvidia0 ==409197== at 0x4CB9764: open (open64.c:41) ==409197== by 0xF1CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF1CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF15DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF1D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF25FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF01A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0x8481023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409197== by 0x8481FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409197== by 0xAEB746A: ??? ==409197== by 0x8AD4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409197== by 0x8AB0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409197== by 0x8A61CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409197== by 0x898EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409197== by 0xAEA5F03: ??? ==409197== by 0x89C34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409197== by 0x6276418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409197== by 0x620FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409197== by 0x4F06D38: PetscInitialize (pinit.c:924) ==409197== by 0x48FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409197== by 0x48FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409197== by 0x11886E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==409197== by 0x112333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409197== by 0x114C32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409197== by 0x114B2D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409197== by 0x115141: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409197== by 0x110B35: main (TestFileComparison.cpp:18) ==409197== ==409197== Open file descriptor 20: /dev/nvidia-uvm ==409197== at 0x4CB9764: open (open64.c:41) ==409197== by 0xF036F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF01A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0x8481023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409197== by 0x8481FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409197== by 0xAEB746A: ??? ==409197== by 0x8AD4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409197== by 0x8AB0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409197== by 0x8A61CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409197== by 0x898EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409197== by 0xAEA5F03: ??? ==409197== by 0x89C34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409197== by 0x6276418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409197== by 0x620FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409197== by 0x4F06D38: PetscInitialize (pinit.c:924) ==409197== by 0x48FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409197== by 0x48FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409197== by 0x11886E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==409197== by 0x112333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409197== by 0x114C32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409197== by 0x114B2D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409197== by 0x115141: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409197== by 0x110B35: main (TestFileComparison.cpp:18) ==409197== ==409197== Open file descriptor 19: /dev/nvidiactl ==409197== at 0x4CB9764: open (open64.c:41) ==409197== by 0xF1CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF1D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xF01A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409197== by 0x8481023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409197== by 0x8481FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409197== by 0xAEB746A: ??? ==409197== by 0x8AD4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409197== by 0x8AB0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409197== by 0x8A61CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409197== by 0x898EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409197== by 0xAEA5F03: ??? ==409197== by 0x89C34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409197== by 0x6276418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409197== by 0x620FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409197== by 0x4F06D38: PetscInitialize (pinit.c:924) ==409197== by 0x48FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409197== by 0x48FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409197== by 0x11886E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==409197== by 0x112333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409197== by 0x114C32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409197== by 0x114B2D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409197== by 0x115141: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409197== by 0x110B35: main (TestFileComparison.cpp:18) ==409197== ==409197== Open file descriptor 12: ==409197== at 0x4CBA22D: pipe (pipe.c:29) ==409197== by 0xAEA507D: ??? ==409197== by 0x89C34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409197== by 0x6276418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409197== by 0x620FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409197== by 0x4F06D38: PetscInitialize (pinit.c:924) ==409197== by 0x48FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409197== by 0x48FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409197== by 0x11886E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==409197== by 0x112333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409197== by 0x114C32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409197== by 0x114B2D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409197== by 0x115141: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409197== by 0x110B35: main (TestFileComparison.cpp:18) ==409197== ==409197== Open file descriptor 8: /dev/shm/open_mpi.0000 ==409197== at 0x4CBEBCC: __open_nocancel (open64_nocancel.c:39) ==409197== by 0x4C42C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==409197== by 0x492F822: ??? ==409197== by 0x492F96F: ??? ==409197== by 0x8A686DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409197== by 0x8A68938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409197== by 0x8A1E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409197== by 0x89C32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409197== by 0x6276418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409197== by 0x620FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409197== by 0x4F06D38: PetscInitialize (pinit.c:924) ==409197== by 0x48FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409197== by 0x48FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409197== by 0x11886E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==409197== by 0x112333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409197== by 0x114C32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409197== by 0x114B2D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409197== by 0x115141: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409197== by 0x110B35: main (TestFileComparison.cpp:18) ==409197== ==409197== Open file descriptor 116: ==409197== ==409197== ==409197== Open file descriptor 113: ==409197== ==409197== ==409197== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFileComparison_valgrind.txt ==409197== ==409197== ==409197== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==409197== ==409197== ==409197== ==409197== HEAP SUMMARY: ==409197== in use at exit: 1,875,303 bytes in 11,738 blocks ==409197== total heap usage: 53,912 allocs, 42,174 frees, 1,533,244,989 bytes allocated ==409197== ==409197== LEAK SUMMARY: ==409197== definitely lost: 0 bytes in 0 blocks ==409197== indirectly lost: 0 bytes in 0 blocks ==409197== possibly lost: 0 bytes in 0 blocks ==409197== still reachable: 24 bytes in 2 blocks ==409197== suppressed: 1,875,279 bytes in 11,736 blocks ==409197== Reachable blocks (those to which a pointer was found) are not shown. ==409197== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==409197== ==409197== For lists of detected and suppressed errors, rerun with: -s ==409197== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 50 from 50)