==410264== Memcheck, a memory error detector
==410264== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==410264== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==410264== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestHdf5Converters -malloc_debug -malloc_dump -memory_info
==410264== Parent PID: 409122
==410264== 
==410264== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints.
==410264==    This could cause spurious value errors to appear.
==410264==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==410264== Warning: noted but unhandled ioctl 0x27 with no size/direction hints.
==410264==    This could cause spurious value errors to appear.
==410264==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==410264== Warning: noted but unhandled ioctl 0x25 with no size/direction hints.
==410264==    This could cause spurious value errors to appear.
==410264==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==410264== Warning: noted but unhandled ioctl 0x17 with no size/direction hints.
==410264==    This could cause spurious value errors to appear.
==410264==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==410264== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess)
==410264== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess)
==410264== Warning: set address range perms: large range [0x1391f000, 0x3391e000) (noaccess)
==410264== 
==410264== FILE DESCRIPTORS: 14 open (3 std) at exit.
==410264== Open file descriptor 23: /dev/nvidia0
==410264==    at 0x7343764: open (open64.c:41)
==410264==    by 0x129CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x129CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x12A66B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x12954026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x1295D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x129D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x12A5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x1281A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0xBBC0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==410264==    by 0xBBC0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==410264==    by 0x104DE46A: ???
==410264==    by 0xC716F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==410264==    by 0xC6F2B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==410264==    by 0xC6A3CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==410264==    by 0xC5D0EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==410264==    by 0x104CCF03: ???
==410264==    by 0xC6054CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==410264==    by 0x8DB9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==410264==    by 0x8D52D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==410264==    by 0x7692D38: PetscInitialize (pinit.c:924)
==410264==    by 0x68EB2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==410264==    by 0x68EB32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==410264==    by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==410264==    by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==410264==    by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==410264==    by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==410264==    by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==410264==    by 0x11B235: main (TestHdf5Converters.cpp:18)
==410264== 
==410264== Open file descriptor 22: /dev/nvidia0
==410264==    at 0x7343764: open (open64.c:41)
==410264==    by 0x129CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x129CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x1295407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x1295D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x129D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x12A5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x1281A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0xBBC0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==410264==    by 0xBBC0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==410264==    by 0x104DE46A: ???
==410264==    by 0xC716F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==410264==    by 0xC6F2B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==410264==    by 0xC6A3CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==410264==    by 0xC5D0EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==410264==    by 0x104CCF03: ???
==410264==    by 0xC6054CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==410264==    by 0x8DB9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==410264==    by 0x8D52D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==410264==    by 0x7692D38: PetscInitialize (pinit.c:924)
==410264==    by 0x68EB2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==410264==    by 0x68EB32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==410264==    by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==410264==    by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==410264==    by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==410264==    by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==410264==    by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==410264==    by 0x11B235: main (TestHdf5Converters.cpp:18)
==410264== 
==410264== Open file descriptor 21: /dev/nvidia0
==410264==    at 0x7343764: open (open64.c:41)
==410264==    by 0x129CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x129CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x1295DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x129D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x12A5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x1281A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0xBBC0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==410264==    by 0xBBC0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==410264==    by 0x104DE46A: ???
==410264==    by 0xC716F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==410264==    by 0xC6F2B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==410264==    by 0xC6A3CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==410264==    by 0xC5D0EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==410264==    by 0x104CCF03: ???
==410264==    by 0xC6054CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==410264==    by 0x8DB9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==410264==    by 0x8D52D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==410264==    by 0x7692D38: PetscInitialize (pinit.c:924)
==410264==    by 0x68EB2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==410264==    by 0x68EB32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==410264==    by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==410264==    by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==410264==    by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==410264==    by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==410264==    by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==410264==    by 0x11B235: main (TestHdf5Converters.cpp:18)
==410264== 
==410264== Open file descriptor 20: /dev/nvidia-uvm
==410264==    at 0x7343764: open (open64.c:41)
==410264==    by 0x12836F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x1281A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0xBBC0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==410264==    by 0xBBC0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==410264==    by 0x104DE46A: ???
==410264==    by 0xC716F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==410264==    by 0xC6F2B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==410264==    by 0xC6A3CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==410264==    by 0xC5D0EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==410264==    by 0x104CCF03: ???
==410264==    by 0xC6054CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==410264==    by 0x8DB9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==410264==    by 0x8D52D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==410264==    by 0x7692D38: PetscInitialize (pinit.c:924)
==410264==    by 0x68EB2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==410264==    by 0x68EB32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==410264==    by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==410264==    by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==410264==    by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==410264==    by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==410264==    by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==410264==    by 0x11B235: main (TestHdf5Converters.cpp:18)
==410264== 
==410264== Open file descriptor 19: /dev/nvidiactl
==410264==    at 0x7343764: open (open64.c:41)
==410264==    by 0x129CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x129D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x1281A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==410264==    by 0xBBC0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==410264==    by 0xBBC0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==410264==    by 0x104DE46A: ???
==410264==    by 0xC716F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==410264==    by 0xC6F2B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==410264==    by 0xC6A3CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==410264==    by 0xC5D0EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==410264==    by 0x104CCF03: ???
==410264==    by 0xC6054CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==410264==    by 0x8DB9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==410264==    by 0x8D52D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==410264==    by 0x7692D38: PetscInitialize (pinit.c:924)
==410264==    by 0x68EB2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==410264==    by 0x68EB32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==410264==    by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==410264==    by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==410264==    by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==410264==    by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==410264==    by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==410264==    by 0x11B235: main (TestHdf5Converters.cpp:18)
==410264== 
==410264== Open file descriptor 12:
==410264==    at 0x734422D: pipe (pipe.c:29)
==410264==    by 0x104CC07D: ???
==410264==    by 0xC6054CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==410264==    by 0x8DB9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==410264==    by 0x8D52D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==410264==    by 0x7692D38: PetscInitialize (pinit.c:924)
==410264==    by 0x68EB2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==410264==    by 0x68EB32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==410264==    by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==410264==    by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==410264==    by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==410264==    by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==410264==    by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==410264==    by 0x11B235: main (TestHdf5Converters.cpp:18)
==410264== 
==410264== Open file descriptor 8: /dev/shm/open_mpi.0000
==410264==    at 0x7348BCC: __open_nocancel (open64_nocancel.c:39)
==410264==    by 0x72CCC4F: shm_open@@GLIBC_2.34 (shm_open.c:40)
==410264==    by 0x6920822: ???
==410264==    by 0x692096F: ???
==410264==    by 0xC6AA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==410264==    by 0xC6AA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==410264==    by 0xC660922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==410264==    by 0xC6052DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==410264==    by 0x8DB9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==410264==    by 0x8D52D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==410264==    by 0x7692D38: PetscInitialize (pinit.c:924)
==410264==    by 0x68EB2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==410264==    by 0x68EB32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==410264==    by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==410264==    by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==410264==    by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==410264==    by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==410264==    by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==410264==    by 0x11B235: main (TestHdf5Converters.cpp:18)
==410264== 
==410264== Open file descriptor 116:
==410264==    <inherited from parent>
==410264== 
==410264== Open file descriptor 113:
==410264==    <inherited from parent>
==410264== 
==410264== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5Converters_valgrind.txt
==410264==    <inherited from parent>
==410264== 
==410264== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==410264==    <inherited from parent>
==410264== 
==410264== 
==410264== HEAP SUMMARY:
==410264==     in use at exit: 1,875,668 bytes in 11,738 blocks
==410264==   total heap usage: 215,124 allocs, 203,386 frees, 1,589,514,201 bytes allocated
==410264== 
==410264== LEAK SUMMARY:
==410264==    definitely lost: 0 bytes in 0 blocks
==410264==    indirectly lost: 0 bytes in 0 blocks
==410264==      possibly lost: 0 bytes in 0 blocks
==410264==    still reachable: 24 bytes in 2 blocks
==410264==         suppressed: 1,875,644 bytes in 11,736 blocks
==410264== Reachable blocks (those to which a pointer was found) are not shown.
==410264== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==410264== 
==410264== For lists of detected and suppressed errors, rerun with: -s
==410264== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 50 from 50)