==410265== Memcheck, a memory error detector ==410265== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==410265== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==410265== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestLinearBasisFunction -malloc_debug -malloc_dump -memory_info ==410265== Parent PID: 409122 ==410265== ==410265== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==410265== This could cause spurious value errors to appear. ==410265== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==410265== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==410265== This could cause spurious value errors to appear. ==410265== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==410265== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==410265== This could cause spurious value errors to appear. ==410265== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==410265== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==410265== This could cause spurious value errors to appear. ==410265== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==410265== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==410265== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==410265== Warning: set address range perms: large range [0x1391f000, 0x3391e000) (noaccess) ==410265== ==410265== FILE DESCRIPTORS: 14 open (3 std) at exit. ==410265== Open file descriptor 23: /dev/nvidia0 ==410265== at 0x6CAA764: open (open64.c:41) ==410265== by 0x129CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x129CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x12A66B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x12954026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x1295D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x129D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x12A5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x1281A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0xB8D6023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410265== by 0xB8D6FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410265== by 0x104DE46A: ??? ==410265== by 0xC42CF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410265== by 0xC408B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410265== by 0xC3B9CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410265== by 0xC2E6EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410265== by 0x104CCF03: ??? ==410265== by 0xC31B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410265== by 0x871E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410265== by 0x86B7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410265== by 0x6FF9D38: PetscInitialize (pinit.c:924) ==410265== by 0x68EB2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410265== by 0x68EB32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410265== by 0x1218A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==410265== by 0x11D073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410265== by 0x11F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410265== by 0x11F565: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410265== by 0x11FB79: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410265== by 0x11B875: main (TestLinearBasisFunction.cpp:18) ==410265== ==410265== Open file descriptor 22: /dev/nvidia0 ==410265== at 0x6CAA764: open (open64.c:41) ==410265== by 0x129CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x129CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x1295407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x1295D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x129D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x12A5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x1281A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0xB8D6023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410265== by 0xB8D6FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410265== by 0x104DE46A: ??? ==410265== by 0xC42CF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410265== by 0xC408B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410265== by 0xC3B9CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410265== by 0xC2E6EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410265== by 0x104CCF03: ??? ==410265== by 0xC31B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410265== by 0x871E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410265== by 0x86B7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410265== by 0x6FF9D38: PetscInitialize (pinit.c:924) ==410265== by 0x68EB2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410265== by 0x68EB32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410265== by 0x1218A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==410265== by 0x11D073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410265== by 0x11F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410265== by 0x11F565: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410265== by 0x11FB79: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410265== by 0x11B875: main (TestLinearBasisFunction.cpp:18) ==410265== ==410265== Open file descriptor 21: /dev/nvidia0 ==410265== at 0x6CAA764: open (open64.c:41) ==410265== by 0x129CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x129CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x1295DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x129D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x12A5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x1281A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0xB8D6023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410265== by 0xB8D6FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410265== by 0x104DE46A: ??? ==410265== by 0xC42CF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410265== by 0xC408B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410265== by 0xC3B9CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410265== by 0xC2E6EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410265== by 0x104CCF03: ??? ==410265== by 0xC31B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410265== by 0x871E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410265== by 0x86B7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410265== by 0x6FF9D38: PetscInitialize (pinit.c:924) ==410265== by 0x68EB2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410265== by 0x68EB32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410265== by 0x1218A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==410265== by 0x11D073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410265== by 0x11F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410265== by 0x11F565: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410265== by 0x11FB79: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410265== by 0x11B875: main (TestLinearBasisFunction.cpp:18) ==410265== ==410265== Open file descriptor 20: /dev/nvidia-uvm ==410265== at 0x6CAA764: open (open64.c:41) ==410265== by 0x12836F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x1281A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0xB8D6023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410265== by 0xB8D6FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410265== by 0x104DE46A: ??? ==410265== by 0xC42CF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410265== by 0xC408B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410265== by 0xC3B9CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410265== by 0xC2E6EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410265== by 0x104CCF03: ??? ==410265== by 0xC31B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410265== by 0x871E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410265== by 0x86B7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410265== by 0x6FF9D38: PetscInitialize (pinit.c:924) ==410265== by 0x68EB2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410265== by 0x68EB32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410265== by 0x1218A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==410265== by 0x11D073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410265== by 0x11F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410265== by 0x11F565: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410265== by 0x11FB79: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410265== by 0x11B875: main (TestLinearBasisFunction.cpp:18) ==410265== ==410265== Open file descriptor 19: /dev/nvidiactl ==410265== at 0x6CAA764: open (open64.c:41) ==410265== by 0x129CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x129D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x1281A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410265== by 0xB8D6023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410265== by 0xB8D6FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410265== by 0x104DE46A: ??? ==410265== by 0xC42CF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410265== by 0xC408B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410265== by 0xC3B9CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410265== by 0xC2E6EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410265== by 0x104CCF03: ??? ==410265== by 0xC31B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410265== by 0x871E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410265== by 0x86B7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410265== by 0x6FF9D38: PetscInitialize (pinit.c:924) ==410265== by 0x68EB2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410265== by 0x68EB32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410265== by 0x1218A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==410265== by 0x11D073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410265== by 0x11F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410265== by 0x11F565: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410265== by 0x11FB79: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410265== by 0x11B875: main (TestLinearBasisFunction.cpp:18) ==410265== ==410265== Open file descriptor 12: ==410265== at 0x6CAB22D: pipe (pipe.c:29) ==410265== by 0x104CC07D: ??? ==410265== by 0xC31B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410265== by 0x871E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410265== by 0x86B7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410265== by 0x6FF9D38: PetscInitialize (pinit.c:924) ==410265== by 0x68EB2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410265== by 0x68EB32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410265== by 0x1218A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==410265== by 0x11D073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410265== by 0x11F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410265== by 0x11F565: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410265== by 0x11FB79: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410265== by 0x11B875: main (TestLinearBasisFunction.cpp:18) ==410265== ==410265== Open file descriptor 8: /dev/shm/open_mpi.0000 ==410265== at 0x6CAFBCC: __open_nocancel (open64_nocancel.c:39) ==410265== by 0x6C33C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==410265== by 0x6920822: ??? ==410265== by 0x692096F: ??? ==410265== by 0xC3C06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410265== by 0xC3C0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410265== by 0xC376922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410265== by 0xC31B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410265== by 0x871E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410265== by 0x86B7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410265== by 0x6FF9D38: PetscInitialize (pinit.c:924) ==410265== by 0x68EB2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410265== by 0x68EB32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410265== by 0x1218A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==410265== by 0x11D073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410265== by 0x11F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410265== by 0x11F565: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410265== by 0x11FB79: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410265== by 0x11B875: main (TestLinearBasisFunction.cpp:18) ==410265== ==410265== Open file descriptor 116: ==410265== ==410265== ==410265== Open file descriptor 113: ==410265== ==410265== ==410265== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearBasisFunction_valgrind.txt ==410265== ==410265== ==410265== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==410265== ==410265== ==410265== ==410265== HEAP SUMMARY: ==410265== in use at exit: 1,875,737 bytes in 11,738 blocks ==410265== total heap usage: 55,879 allocs, 44,141 frees, 1,533,013,486 bytes allocated ==410265== ==410265== LEAK SUMMARY: ==410265== definitely lost: 0 bytes in 0 blocks ==410265== indirectly lost: 0 bytes in 0 blocks ==410265== possibly lost: 0 bytes in 0 blocks ==410265== still reachable: 24 bytes in 2 blocks ==410265== suppressed: 1,875,713 bytes in 11,736 blocks ==410265== Reachable blocks (those to which a pointer was found) are not shown. ==410265== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==410265== ==410265== For lists of detected and suppressed errors, rerun with: -s ==410265== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)