==427411== Memcheck, a memory error detector ==427411== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==427411== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==427411== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==427411== Parent PID: 409122 ==427411== ==427411== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==427411== This could cause spurious value errors to appear. ==427411== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==427411== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==427411== This could cause spurious value errors to appear. ==427411== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==427411== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==427411== This could cause spurious value errors to appear. ==427411== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==427411== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==427411== This could cause spurious value errors to appear. ==427411== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==427411== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==427411== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==427411== Warning: set address range perms: large range [0x1771f000, 0x3771e000) (noaccess) ==427411== Warning: invalid file descriptor -1 in syscall close() ==427411== ==427411== FILE DESCRIPTORS: 14 open (3 std) at exit. ==427411== Open file descriptor 23: /dev/nvidia0 ==427411== at 0xC101764: open (open64.c:41) ==427411== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x167CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x16866B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x16754026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x1675D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x167D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0xF5A3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==427411== by 0xF5A3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==427411== by 0x1433046A: ??? ==427411== by 0x100FEF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==427411== by 0x100DAB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==427411== by 0x1008BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==427411== by 0xFFB8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==427411== by 0x1431EF03: ??? ==427411== by 0xFFED4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==427411== by 0xB9F0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==427411== by 0xB989D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==427411== by 0xA2CBD38: PetscInitialize (pinit.c:924) ==427411== by 0xA1332DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==427411== by 0xA13332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==427411== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==427411== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==427411== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==427411== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==427411== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==427411== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==427411== ==427411== Open file descriptor 22: /dev/nvidia0 ==427411== at 0xC101764: open (open64.c:41) ==427411== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x167CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x1675407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x1675D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x167D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0xF5A3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==427411== by 0xF5A3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==427411== by 0x1433046A: ??? ==427411== by 0x100FEF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==427411== by 0x100DAB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==427411== by 0x1008BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==427411== by 0xFFB8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==427411== by 0x1431EF03: ??? ==427411== by 0xFFED4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==427411== by 0xB9F0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==427411== by 0xB989D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==427411== by 0xA2CBD38: PetscInitialize (pinit.c:924) ==427411== by 0xA1332DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==427411== by 0xA13332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==427411== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==427411== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==427411== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==427411== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==427411== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==427411== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==427411== ==427411== Open file descriptor 21: /dev/nvidia0 ==427411== at 0xC101764: open (open64.c:41) ==427411== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x167CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x1675DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x167D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0xF5A3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==427411== by 0xF5A3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==427411== by 0x1433046A: ??? ==427411== by 0x100FEF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==427411== by 0x100DAB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==427411== by 0x1008BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==427411== by 0xFFB8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==427411== by 0x1431EF03: ??? ==427411== by 0xFFED4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==427411== by 0xB9F0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==427411== by 0xB989D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==427411== by 0xA2CBD38: PetscInitialize (pinit.c:924) ==427411== by 0xA1332DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==427411== by 0xA13332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==427411== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==427411== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==427411== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==427411== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==427411== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==427411== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==427411== ==427411== Open file descriptor 20: /dev/nvidia-uvm ==427411== at 0xC101764: open (open64.c:41) ==427411== by 0x16636F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x1661A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0xF5A3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==427411== by 0xF5A3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==427411== by 0x1433046A: ??? ==427411== by 0x100FEF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==427411== by 0x100DAB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==427411== by 0x1008BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==427411== by 0xFFB8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==427411== by 0x1431EF03: ??? ==427411== by 0xFFED4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==427411== by 0xB9F0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==427411== by 0xB989D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==427411== by 0xA2CBD38: PetscInitialize (pinit.c:924) ==427411== by 0xA1332DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==427411== by 0xA13332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==427411== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==427411== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==427411== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==427411== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==427411== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==427411== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==427411== ==427411== Open file descriptor 19: /dev/nvidiactl ==427411== at 0xC101764: open (open64.c:41) ==427411== by 0x167CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x167D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x1661A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==427411== by 0xF5A3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==427411== by 0xF5A3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==427411== by 0x1433046A: ??? ==427411== by 0x100FEF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==427411== by 0x100DAB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==427411== by 0x1008BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==427411== by 0xFFB8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==427411== by 0x1431EF03: ??? ==427411== by 0xFFED4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==427411== by 0xB9F0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==427411== by 0xB989D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==427411== by 0xA2CBD38: PetscInitialize (pinit.c:924) ==427411== by 0xA1332DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==427411== by 0xA13332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==427411== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==427411== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==427411== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==427411== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==427411== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==427411== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==427411== ==427411== Open file descriptor 12: ==427411== at 0xC10222D: pipe (pipe.c:29) ==427411== by 0x1431E07D: ??? ==427411== by 0xFFED4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==427411== by 0xB9F0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==427411== by 0xB989D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==427411== by 0xA2CBD38: PetscInitialize (pinit.c:924) ==427411== by 0xA1332DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==427411== by 0xA13332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==427411== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==427411== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==427411== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==427411== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==427411== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==427411== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==427411== ==427411== Open file descriptor 8: /dev/shm/open_mpi.0000 ==427411== at 0xC106BCC: __open_nocancel (open64_nocancel.c:39) ==427411== by 0xC08AC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==427411== by 0xA168822: ??? ==427411== by 0xA16896F: ??? ==427411== by 0x100926DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==427411== by 0x10092938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==427411== by 0x10048922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==427411== by 0xFFED2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==427411== by 0xB9F0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==427411== by 0xB989D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==427411== by 0xA2CBD38: PetscInitialize (pinit.c:924) ==427411== by 0xA1332DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==427411== by 0xA13332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==427411== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==427411== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==427411== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==427411== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==427411== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==427411== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==427411== ==427411== Open file descriptor 116: ==427411== ==427411== ==427411== Open file descriptor 113: ==427411== ==427411== ==427411== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==427411== ==427411== ==427411== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==427411== ==427411== ==427411== ==427411== HEAP SUMMARY: ==427411== in use at exit: 1,876,239 bytes in 11,744 blocks ==427411== total heap usage: 6,626,568 allocs, 6,614,824 frees, 4,213,208,370 bytes allocated ==427411== ==427411== LEAK SUMMARY: ==427411== definitely lost: 0 bytes in 0 blocks ==427411== indirectly lost: 0 bytes in 0 blocks ==427411== possibly lost: 0 bytes in 0 blocks ==427411== still reachable: 24 bytes in 2 blocks ==427411== suppressed: 1,876,215 bytes in 11,742 blocks ==427411== Reachable blocks (those to which a pointer was found) are not shown. ==427411== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==427411== ==427411== For lists of detected and suppressed errors, rerun with: -s ==427411== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 144 from 50)