==409553== Memcheck, a memory error detector ==409553== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==409553== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==409553== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableMesh -malloc_debug -malloc_dump -memory_info ==409553== Parent PID: 409122 ==409553== ==409553== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==409553== This could cause spurious value errors to appear. ==409553== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==409553== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==409553== This could cause spurious value errors to appear. ==409553== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==409553== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==409553== This could cause spurious value errors to appear. ==409553== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==409553== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==409553== This could cause spurious value errors to appear. ==409553== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==409553== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==409553== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==409553== Warning: set address range perms: large range [0x1351f000, 0x3351e000) (noaccess) ==409553== ==409553== FILE DESCRIPTORS: 14 open (3 std) at exit. ==409553== Open file descriptor 23: /dev/nvidia0 ==409553== at 0x6C94764: open (open64.c:41) ==409553== by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x125CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x12666B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x12554026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x1255D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x125D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x83F0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409553== by 0x83F0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409553== by 0x100CC46A: ??? ==409553== by 0xBB5FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409553== by 0xBB3BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409553== by 0xBAECCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409553== by 0xBA19EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409553== by 0x100BAF03: ??? ==409553== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409553== by 0x829E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409553== by 0x8237D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409553== by 0x6F2ED38: PetscInitialize (pinit.c:924) ==409553== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409553== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409553== by 0x1333C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==409553== by 0x12DDFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409553== by 0x13101C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409553== by 0x130EBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409553== by 0x131553: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409553== by 0x12C225: main (TestMutableMesh.cpp:19) ==409553== ==409553== Open file descriptor 22: /dev/nvidia0 ==409553== at 0x6C94764: open (open64.c:41) ==409553== by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x125CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x1255407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x1255D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x125D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x83F0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409553== by 0x83F0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409553== by 0x100CC46A: ??? ==409553== by 0xBB5FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409553== by 0xBB3BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409553== by 0xBAECCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409553== by 0xBA19EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409553== by 0x100BAF03: ??? ==409553== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409553== by 0x829E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409553== by 0x8237D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409553== by 0x6F2ED38: PetscInitialize (pinit.c:924) ==409553== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409553== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409553== by 0x1333C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==409553== by 0x12DDFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409553== by 0x13101C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409553== by 0x130EBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409553== by 0x131553: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409553== by 0x12C225: main (TestMutableMesh.cpp:19) ==409553== ==409553== Open file descriptor 21: /dev/nvidia0 ==409553== at 0x6C94764: open (open64.c:41) ==409553== by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x125CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x1255DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x125D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x83F0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409553== by 0x83F0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409553== by 0x100CC46A: ??? ==409553== by 0xBB5FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409553== by 0xBB3BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409553== by 0xBAECCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409553== by 0xBA19EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409553== by 0x100BAF03: ??? ==409553== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409553== by 0x829E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409553== by 0x8237D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409553== by 0x6F2ED38: PetscInitialize (pinit.c:924) ==409553== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409553== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409553== by 0x1333C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==409553== by 0x12DDFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409553== by 0x13101C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409553== by 0x130EBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409553== by 0x131553: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409553== by 0x12C225: main (TestMutableMesh.cpp:19) ==409553== ==409553== Open file descriptor 20: /dev/nvidia-uvm ==409553== at 0x6C94764: open (open64.c:41) ==409553== by 0x12436F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x1241A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x83F0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409553== by 0x83F0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409553== by 0x100CC46A: ??? ==409553== by 0xBB5FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409553== by 0xBB3BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409553== by 0xBAECCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409553== by 0xBA19EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409553== by 0x100BAF03: ??? ==409553== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409553== by 0x829E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409553== by 0x8237D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409553== by 0x6F2ED38: PetscInitialize (pinit.c:924) ==409553== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409553== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409553== by 0x1333C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==409553== by 0x12DDFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409553== by 0x13101C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409553== by 0x130EBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409553== by 0x131553: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409553== by 0x12C225: main (TestMutableMesh.cpp:19) ==409553== ==409553== Open file descriptor 19: /dev/nvidiactl ==409553== at 0x6C94764: open (open64.c:41) ==409553== by 0x125CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x125D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x1241A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409553== by 0x83F0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409553== by 0x83F0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409553== by 0x100CC46A: ??? ==409553== by 0xBB5FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409553== by 0xBB3BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409553== by 0xBAECCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409553== by 0xBA19EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409553== by 0x100BAF03: ??? ==409553== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409553== by 0x829E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409553== by 0x8237D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409553== by 0x6F2ED38: PetscInitialize (pinit.c:924) ==409553== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409553== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409553== by 0x1333C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==409553== by 0x12DDFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409553== by 0x13101C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409553== by 0x130EBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409553== by 0x131553: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409553== by 0x12C225: main (TestMutableMesh.cpp:19) ==409553== ==409553== Open file descriptor 12: ==409553== at 0x6C9522D: pipe (pipe.c:29) ==409553== by 0x100BA07D: ??? ==409553== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409553== by 0x829E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409553== by 0x8237D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409553== by 0x6F2ED38: PetscInitialize (pinit.c:924) ==409553== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409553== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409553== by 0x1333C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==409553== by 0x12DDFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409553== by 0x13101C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409553== by 0x130EBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409553== by 0x131553: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409553== by 0x12C225: main (TestMutableMesh.cpp:19) ==409553== ==409553== Open file descriptor 8: /dev/shm/open_mpi.0000 ==409553== at 0x6C99BCC: __open_nocancel (open64_nocancel.c:39) ==409553== by 0x6C1DC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==409553== by 0x6581822: ??? ==409553== by 0x658196F: ??? ==409553== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409553== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409553== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409553== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409553== by 0x829E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409553== by 0x8237D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409553== by 0x6F2ED38: PetscInitialize (pinit.c:924) ==409553== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409553== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409553== by 0x1333C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==409553== by 0x12DDFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409553== by 0x13101C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409553== by 0x130EBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409553== by 0x131553: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409553== by 0x12C225: main (TestMutableMesh.cpp:19) ==409553== ==409553== Open file descriptor 116: ==409553== ==409553== ==409553== Open file descriptor 113: ==409553== ==409553== ==409553== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableMesh_valgrind.txt ==409553== ==409553== ==409553== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==409553== ==409553== ==409553== ==409553== HEAP SUMMARY: ==409553== in use at exit: 1,875,602 bytes in 11,738 blocks ==409553== total heap usage: 714,468 allocs, 702,730 frees, 1,563,084,191 bytes allocated ==409553== ==409553== LEAK SUMMARY: ==409553== definitely lost: 0 bytes in 0 blocks ==409553== indirectly lost: 0 bytes in 0 blocks ==409553== possibly lost: 0 bytes in 0 blocks ==409553== still reachable: 24 bytes in 2 blocks ==409553== suppressed: 1,875,578 bytes in 11,736 blocks ==409553== Reachable blocks (those to which a pointer was found) are not shown. ==409553== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==409553== ==409553== For lists of detected and suppressed errors, rerun with: -s ==409553== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 50 from 50)