==410358== Memcheck, a memory error detector ==410358== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==410358== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==410358== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestNonlinearElasticityTools -malloc_debug -malloc_dump -memory_info ==410358== Parent PID: 409122 ==410358== ==410358== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==410358== This could cause spurious value errors to appear. ==410358== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==410358== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==410358== This could cause spurious value errors to appear. ==410358== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==410358== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==410358== This could cause spurious value errors to appear. ==410358== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==410358== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==410358== This could cause spurious value errors to appear. ==410358== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==410358== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==410358== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==410358== Warning: set address range perms: large range [0x13b1f000, 0x33b1e000) (noaccess) ==410358== ==410358== FILE DESCRIPTORS: 14 open (3 std) at exit. ==410358== Open file descriptor 23: /dev/nvidia0 ==410358== at 0x6DD2764: open (open64.c:41) ==410358== by 0x12BCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12BCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12C66B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12B54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12B5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12BD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12C5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12A1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0xBA9F023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410358== by 0xBA9FFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410358== by 0x106E246A: ??? ==410358== by 0xC0F0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410358== by 0xC0CCB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410358== by 0xC07DCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410358== by 0xBFAAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410358== by 0x106D0F03: ??? ==410358== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410358== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410358== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410358== by 0x7409D38: PetscInitialize (pinit.c:924) ==410358== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410358== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410358== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==410358== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410358== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410358== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410358== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410358== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==410358== ==410358== Open file descriptor 22: /dev/nvidia0 ==410358== at 0x6DD2764: open (open64.c:41) ==410358== by 0x12BCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12BCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12B5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12B5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12BD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12C5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12A1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0xBA9F023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410358== by 0xBA9FFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410358== by 0x106E246A: ??? ==410358== by 0xC0F0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410358== by 0xC0CCB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410358== by 0xC07DCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410358== by 0xBFAAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410358== by 0x106D0F03: ??? ==410358== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410358== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410358== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410358== by 0x7409D38: PetscInitialize (pinit.c:924) ==410358== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410358== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410358== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==410358== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410358== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410358== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410358== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410358== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==410358== ==410358== Open file descriptor 21: /dev/nvidia0 ==410358== at 0x6DD2764: open (open64.c:41) ==410358== by 0x12BCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12BCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12B5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12BD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12C5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12A1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0xBA9F023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410358== by 0xBA9FFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410358== by 0x106E246A: ??? ==410358== by 0xC0F0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410358== by 0xC0CCB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410358== by 0xC07DCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410358== by 0xBFAAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410358== by 0x106D0F03: ??? ==410358== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410358== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410358== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410358== by 0x7409D38: PetscInitialize (pinit.c:924) ==410358== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410358== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410358== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==410358== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410358== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410358== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410358== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410358== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==410358== ==410358== Open file descriptor 20: /dev/nvidia-uvm ==410358== at 0x6DD2764: open (open64.c:41) ==410358== by 0x12A36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12A1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0xBA9F023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410358== by 0xBA9FFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410358== by 0x106E246A: ??? ==410358== by 0xC0F0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410358== by 0xC0CCB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410358== by 0xC07DCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410358== by 0xBFAAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410358== by 0x106D0F03: ??? ==410358== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410358== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410358== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410358== by 0x7409D38: PetscInitialize (pinit.c:924) ==410358== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410358== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410358== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==410358== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410358== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410358== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410358== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410358== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==410358== ==410358== Open file descriptor 19: /dev/nvidiactl ==410358== at 0x6DD2764: open (open64.c:41) ==410358== by 0x12BCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12BD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x12A1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==410358== by 0xBA9F023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410358== by 0xBA9FFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==410358== by 0x106E246A: ??? ==410358== by 0xC0F0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410358== by 0xC0CCB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==410358== by 0xC07DCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410358== by 0xBFAAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410358== by 0x106D0F03: ??? ==410358== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410358== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410358== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410358== by 0x7409D38: PetscInitialize (pinit.c:924) ==410358== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410358== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410358== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==410358== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410358== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410358== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410358== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410358== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==410358== ==410358== Open file descriptor 12: ==410358== at 0x6DD322D: pipe (pipe.c:29) ==410358== by 0x106D007D: ??? ==410358== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410358== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410358== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410358== by 0x7409D38: PetscInitialize (pinit.c:924) ==410358== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410358== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410358== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==410358== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410358== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410358== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410358== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410358== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==410358== ==410358== Open file descriptor 8: /dev/shm/open_mpi.0000 ==410358== at 0x6DD7BCC: __open_nocancel (open64_nocancel.c:39) ==410358== by 0x6D5BC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==410358== by 0x6703822: ??? ==410358== by 0x670396F: ??? ==410358== by 0xC0846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410358== by 0xC084938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410358== by 0xC03A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==410358== by 0xBFDF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==410358== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410358== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==410358== by 0x7409D38: PetscInitialize (pinit.c:924) ==410358== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==410358== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==410358== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==410358== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==410358== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==410358== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==410358== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==410358== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==410358== ==410358== Open file descriptor 116: ==410358== ==410358== ==410358== Open file descriptor 113: ==410358== ==410358== ==410358== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonlinearElasticityTools_valgrind.txt ==410358== ==410358== ==410358== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==410358== ==410358== ==410358== ==410358== HEAP SUMMARY: ==410358== in use at exit: 1,875,774 bytes in 11,738 blocks ==410358== total heap usage: 66,296 allocs, 54,558 frees, 1,534,093,280 bytes allocated ==410358== ==410358== LEAK SUMMARY: ==410358== definitely lost: 0 bytes in 0 blocks ==410358== indirectly lost: 0 bytes in 0 blocks ==410358== possibly lost: 0 bytes in 0 blocks ==410358== still reachable: 24 bytes in 2 blocks ==410358== suppressed: 1,875,750 bytes in 11,736 blocks ==410358== Reachable blocks (those to which a pointer was found) are not shown. ==410358== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==410358== ==410358== For lists of detected and suppressed errors, rerun with: -s ==410358== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 50 from 50)