==409807== Memcheck, a memory error detector
==409807== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==409807== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==409807== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidal2dVertexMesh -malloc_debug -malloc_dump -memory_info
==409807== Parent PID: 409122
==409807== 
==409807== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints.
==409807==    This could cause spurious value errors to appear.
==409807==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==409807== Warning: noted but unhandled ioctl 0x27 with no size/direction hints.
==409807==    This could cause spurious value errors to appear.
==409807==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==409807== Warning: noted but unhandled ioctl 0x25 with no size/direction hints.
==409807==    This could cause spurious value errors to appear.
==409807==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==409807== Warning: noted but unhandled ioctl 0x17 with no size/direction hints.
==409807==    This could cause spurious value errors to appear.
==409807==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==409807== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess)
==409807== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess)
==409807== Warning: set address range perms: large range [0x1351f000, 0x3351e000) (noaccess)
==409807== 
==409807== FILE DESCRIPTORS: 14 open (3 std) at exit.
==409807== Open file descriptor 23: /dev/nvidia0
==409807==    at 0x8232764: open (open64.c:41)
==409807==    by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x125CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x12666B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x12554026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x1255D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x125D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0xB4BB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==409807==    by 0xB4BBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==409807==    by 0x100CE46A: ???
==409807==    by 0xBB10F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==409807==    by 0xBAECB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==409807==    by 0xBA9BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==409807==    by 0xB9C8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==409807==    by 0x100BCF03: ???
==409807==    by 0xB9FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==409807==    by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==409807==    by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==409807==    by 0x66E4D38: PetscInitialize (pinit.c:924)
==409807==    by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==409807==    by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==409807==    by 0x12A981: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==409807==    by 0x12519D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==409807==    by 0x1281A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==409807==    by 0x128046: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==409807==    by 0x1286DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==409807==    by 0x1235C5: main (TestToroidal2dVertexMesh.cpp:19)
==409807== 
==409807== Open file descriptor 22: /dev/nvidia0
==409807==    at 0x8232764: open (open64.c:41)
==409807==    by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x125CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x1255407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x1255D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x125D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0xB4BB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==409807==    by 0xB4BBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==409807==    by 0x100CE46A: ???
==409807==    by 0xBB10F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==409807==    by 0xBAECB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==409807==    by 0xBA9BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==409807==    by 0xB9C8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==409807==    by 0x100BCF03: ???
==409807==    by 0xB9FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==409807==    by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==409807==    by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==409807==    by 0x66E4D38: PetscInitialize (pinit.c:924)
==409807==    by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==409807==    by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==409807==    by 0x12A981: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==409807==    by 0x12519D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==409807==    by 0x1281A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==409807==    by 0x128046: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==409807==    by 0x1286DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==409807==    by 0x1235C5: main (TestToroidal2dVertexMesh.cpp:19)
==409807== 
==409807== Open file descriptor 21: /dev/nvidia0
==409807==    at 0x8232764: open (open64.c:41)
==409807==    by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x125CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x1255DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x125D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0xB4BB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==409807==    by 0xB4BBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==409807==    by 0x100CE46A: ???
==409807==    by 0xBB10F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==409807==    by 0xBAECB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==409807==    by 0xBA9BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==409807==    by 0xB9C8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==409807==    by 0x100BCF03: ???
==409807==    by 0xB9FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==409807==    by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==409807==    by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==409807==    by 0x66E4D38: PetscInitialize (pinit.c:924)
==409807==    by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==409807==    by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==409807==    by 0x12A981: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==409807==    by 0x12519D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==409807==    by 0x1281A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==409807==    by 0x128046: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==409807==    by 0x1286DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==409807==    by 0x1235C5: main (TestToroidal2dVertexMesh.cpp:19)
==409807== 
==409807== Open file descriptor 20: /dev/nvidia-uvm
==409807==    at 0x8232764: open (open64.c:41)
==409807==    by 0x12436F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x1241A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0xB4BB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==409807==    by 0xB4BBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==409807==    by 0x100CE46A: ???
==409807==    by 0xBB10F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==409807==    by 0xBAECB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==409807==    by 0xBA9BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==409807==    by 0xB9C8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==409807==    by 0x100BCF03: ???
==409807==    by 0xB9FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==409807==    by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==409807==    by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==409807==    by 0x66E4D38: PetscInitialize (pinit.c:924)
==409807==    by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==409807==    by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==409807==    by 0x12A981: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==409807==    by 0x12519D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==409807==    by 0x1281A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==409807==    by 0x128046: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==409807==    by 0x1286DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==409807==    by 0x1235C5: main (TestToroidal2dVertexMesh.cpp:19)
==409807== 
==409807== Open file descriptor 19: /dev/nvidiactl
==409807==    at 0x8232764: open (open64.c:41)
==409807==    by 0x125CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x125D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x1241A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==409807==    by 0xB4BB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==409807==    by 0xB4BBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==409807==    by 0x100CE46A: ???
==409807==    by 0xBB10F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==409807==    by 0xBAECB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==409807==    by 0xBA9BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==409807==    by 0xB9C8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==409807==    by 0x100BCF03: ???
==409807==    by 0xB9FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==409807==    by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==409807==    by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==409807==    by 0x66E4D38: PetscInitialize (pinit.c:924)
==409807==    by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==409807==    by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==409807==    by 0x12A981: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==409807==    by 0x12519D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==409807==    by 0x1281A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==409807==    by 0x128046: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==409807==    by 0x1286DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==409807==    by 0x1235C5: main (TestToroidal2dVertexMesh.cpp:19)
==409807== 
==409807== Open file descriptor 12:
==409807==    at 0x823322D: pipe (pipe.c:29)
==409807==    by 0x100BC07D: ???
==409807==    by 0xB9FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==409807==    by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==409807==    by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==409807==    by 0x66E4D38: PetscInitialize (pinit.c:924)
==409807==    by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==409807==    by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==409807==    by 0x12A981: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==409807==    by 0x12519D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==409807==    by 0x1281A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==409807==    by 0x128046: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==409807==    by 0x1286DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==409807==    by 0x1235C5: main (TestToroidal2dVertexMesh.cpp:19)
==409807== 
==409807== Open file descriptor 8: /dev/shm/open_mpi.0000
==409807==    at 0x8237BCC: __open_nocancel (open64_nocancel.c:39)
==409807==    by 0x81BBC4F: shm_open@@GLIBC_2.34 (shm_open.c:40)
==409807==    by 0x6581822: ???
==409807==    by 0x658196F: ???
==409807==    by 0xBAA26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==409807==    by 0xBAA2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==409807==    by 0xBA58922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==409807==    by 0xB9FD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==409807==    by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==409807==    by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==409807==    by 0x66E4D38: PetscInitialize (pinit.c:924)
==409807==    by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==409807==    by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==409807==    by 0x12A981: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==409807==    by 0x12519D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==409807==    by 0x1281A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==409807==    by 0x128046: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==409807==    by 0x1286DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==409807==    by 0x1235C5: main (TestToroidal2dVertexMesh.cpp:19)
==409807== 
==409807== Open file descriptor 116:
==409807==    <inherited from parent>
==409807== 
==409807== Open file descriptor 113:
==409807==    <inherited from parent>
==409807== 
==409807== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidal2dVertexMesh_valgrind.txt
==409807==    <inherited from parent>
==409807== 
==409807== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==409807==    <inherited from parent>
==409807== 
==409807== 
==409807== HEAP SUMMARY:
==409807==     in use at exit: 1,875,675 bytes in 11,738 blocks
==409807==   total heap usage: 153,078 allocs, 141,340 frees, 1,541,490,124 bytes allocated
==409807== 
==409807== LEAK SUMMARY:
==409807==    definitely lost: 0 bytes in 0 blocks
==409807==    indirectly lost: 0 bytes in 0 blocks
==409807==      possibly lost: 0 bytes in 0 blocks
==409807==    still reachable: 24 bytes in 2 blocks
==409807==         suppressed: 1,875,651 bytes in 11,736 blocks
==409807== Reachable blocks (those to which a pointer was found) are not shown.
==409807== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==409807== 
==409807== For lists of detected and suppressed errors, rerun with: -s
==409807== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 51 from 51)