==424976== Memcheck, a memory error detector ==424976== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==424976== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==424976== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexCryptBoundaryForce -malloc_debug -malloc_dump -memory_info ==424976== Parent PID: 409122 ==424976== ==424976== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==424976== This could cause spurious value errors to appear. ==424976== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==424976== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==424976== This could cause spurious value errors to appear. ==424976== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==424976== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==424976== This could cause spurious value errors to appear. ==424976== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==424976== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==424976== This could cause spurious value errors to appear. ==424976== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==424976== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==424976== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==424976== Warning: set address range perms: large range [0x1e71f000, 0x3e71e000) (noaccess) ==424976== ==424976== FILE DESCRIPTORS: 14 open (3 std) at exit. ==424976== Open file descriptor 23: /dev/nvidia0 ==424976== at 0x110B8764: open (open64.c:41) ==424976== by 0x1D7CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D7CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D866B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D754026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D75D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D7D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D85FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D61A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D5648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x16030023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==424976== by 0x16030FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==424976== by 0x1B37A46A: ??? ==424976== by 0x16685F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==424976== by 0x16661B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==424976== by 0x16610CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==424976== by 0x1653DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==424976== by 0x1B368F03: ??? ==424976== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==424976== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==424976== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==424976== by 0x11AD0D38: PetscInitialize (pinit.c:924) ==424976== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==424976== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==424976== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==424976== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==424976== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==424976== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==424976== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==424976== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==424976== ==424976== Open file descriptor 22: /dev/nvidia0 ==424976== at 0x110B8764: open (open64.c:41) ==424976== by 0x1D7CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D7CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D75407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D75D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D7D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D85FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D61A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D5648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x16030023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==424976== by 0x16030FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==424976== by 0x1B37A46A: ??? ==424976== by 0x16685F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==424976== by 0x16661B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==424976== by 0x16610CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==424976== by 0x1653DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==424976== by 0x1B368F03: ??? ==424976== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==424976== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==424976== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==424976== by 0x11AD0D38: PetscInitialize (pinit.c:924) ==424976== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==424976== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==424976== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==424976== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==424976== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==424976== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==424976== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==424976== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==424976== ==424976== Open file descriptor 21: /dev/nvidia0 ==424976== at 0x110B8764: open (open64.c:41) ==424976== by 0x1D7CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D7CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D75DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D7D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D85FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D61A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D5648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x16030023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==424976== by 0x16030FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==424976== by 0x1B37A46A: ??? ==424976== by 0x16685F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==424976== by 0x16661B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==424976== by 0x16610CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==424976== by 0x1653DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==424976== by 0x1B368F03: ??? ==424976== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==424976== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==424976== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==424976== by 0x11AD0D38: PetscInitialize (pinit.c:924) ==424976== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==424976== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==424976== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==424976== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==424976== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==424976== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==424976== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==424976== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==424976== ==424976== Open file descriptor 20: /dev/nvidia-uvm ==424976== at 0x110B8764: open (open64.c:41) ==424976== by 0x1D636F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D61A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D5648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x16030023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==424976== by 0x16030FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==424976== by 0x1B37A46A: ??? ==424976== by 0x16685F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==424976== by 0x16661B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==424976== by 0x16610CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==424976== by 0x1653DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==424976== by 0x1B368F03: ??? ==424976== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==424976== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==424976== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==424976== by 0x11AD0D38: PetscInitialize (pinit.c:924) ==424976== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==424976== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==424976== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==424976== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==424976== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==424976== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==424976== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==424976== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==424976== ==424976== Open file descriptor 19: /dev/nvidiactl ==424976== at 0x110B8764: open (open64.c:41) ==424976== by 0x1D7CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D7D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D61A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x1D5648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==424976== by 0x16030023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==424976== by 0x16030FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==424976== by 0x1B37A46A: ??? ==424976== by 0x16685F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==424976== by 0x16661B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==424976== by 0x16610CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==424976== by 0x1653DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==424976== by 0x1B368F03: ??? ==424976== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==424976== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==424976== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==424976== by 0x11AD0D38: PetscInitialize (pinit.c:924) ==424976== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==424976== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==424976== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==424976== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==424976== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==424976== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==424976== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==424976== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==424976== ==424976== Open file descriptor 12: ==424976== at 0x110B922D: pipe (pipe.c:29) ==424976== by 0x1B36807D: ??? ==424976== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==424976== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==424976== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==424976== by 0x11AD0D38: PetscInitialize (pinit.c:924) ==424976== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==424976== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==424976== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==424976== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==424976== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==424976== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==424976== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==424976== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==424976== ==424976== Open file descriptor 8: /dev/shm/open_mpi.0000 ==424976== at 0x110BDBCC: __open_nocancel (open64_nocancel.c:39) ==424976== by 0x11041C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==424976== by 0x109E9822: ??? ==424976== by 0x109E996F: ??? ==424976== by 0x166176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==424976== by 0x16617938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==424976== by 0x165CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==424976== by 0x165722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==424976== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==424976== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==424976== by 0x11AD0D38: PetscInitialize (pinit.c:924) ==424976== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==424976== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==424976== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==424976== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==424976== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==424976== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==424976== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==424976== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==424976== ==424976== Open file descriptor 116: ==424976== ==424976== ==424976== Open file descriptor 113: ==424976== ==424976== ==424976== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexCryptBoundaryForce_valgrind.txt ==424976== ==424976== ==424976== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==424976== ==424976== ==424976== ==424976== HEAP SUMMARY: ==424976== in use at exit: 1,875,936 bytes in 11,739 blocks ==424976== total heap usage: 65,031 allocs, 53,292 frees, 1,533,809,571 bytes allocated ==424976== ==424976== LEAK SUMMARY: ==424976== definitely lost: 0 bytes in 0 blocks ==424976== indirectly lost: 0 bytes in 0 blocks ==424976== possibly lost: 0 bytes in 0 blocks ==424976== still reachable: 56 bytes in 3 blocks ==424976== suppressed: 1,875,880 bytes in 11,736 blocks ==424976== Reachable blocks (those to which a pointer was found) are not shown. ==424976== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==424976== ==424976== For lists of detected and suppressed errors, rerun with: -s ==424976== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)