==409850== Memcheck, a memory error detector ==409850== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==409850== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==409850== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMesh -malloc_debug -malloc_dump -memory_info ==409850== Parent PID: 409122 ==409850== ==409850== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==409850== This could cause spurious value errors to appear. ==409850== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==409850== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==409850== This could cause spurious value errors to appear. ==409850== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==409850== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==409850== This could cause spurious value errors to appear. ==409850== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==409850== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==409850== This could cause spurious value errors to appear. ==409850== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==409850== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==409850== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==409850== Warning: set address range perms: large range [0x1351f000, 0x3351e000) (noaccess) ==409850== ==409850== FILE DESCRIPTORS: 14 open (3 std) at exit. ==409850== Open file descriptor 23: /dev/nvidia0 ==409850== at 0x8232764: open (open64.c:41) ==409850== by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x125CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x12666B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x12554026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x1255D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x125D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0xB4BB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409850== by 0xB4BBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409850== by 0x100CE46A: ??? ==409850== by 0xBB10F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409850== by 0xBAECB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409850== by 0xBA9BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409850== by 0xB9C8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409850== by 0x100BCF03: ??? ==409850== by 0xB9FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409850== by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409850== by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409850== by 0x66E4D38: PetscInitialize (pinit.c:924) ==409850== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409850== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409850== by 0x14372D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==409850== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409850== by 0x14137A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409850== by 0x14121A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409850== by 0x1418B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409850== by 0x13BF25: main (TestVertexMesh.cpp:19) ==409850== ==409850== Open file descriptor 22: /dev/nvidia0 ==409850== at 0x8232764: open (open64.c:41) ==409850== by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x125CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x1255407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x1255D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x125D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0xB4BB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409850== by 0xB4BBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409850== by 0x100CE46A: ??? ==409850== by 0xBB10F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409850== by 0xBAECB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409850== by 0xBA9BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409850== by 0xB9C8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409850== by 0x100BCF03: ??? ==409850== by 0xB9FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409850== by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409850== by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409850== by 0x66E4D38: PetscInitialize (pinit.c:924) ==409850== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409850== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409850== by 0x14372D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==409850== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409850== by 0x14137A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409850== by 0x14121A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409850== by 0x1418B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409850== by 0x13BF25: main (TestVertexMesh.cpp:19) ==409850== ==409850== Open file descriptor 21: /dev/nvidia0 ==409850== at 0x8232764: open (open64.c:41) ==409850== by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x125CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x1255DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x125D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0xB4BB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409850== by 0xB4BBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409850== by 0x100CE46A: ??? ==409850== by 0xBB10F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409850== by 0xBAECB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409850== by 0xBA9BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409850== by 0xB9C8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409850== by 0x100BCF03: ??? ==409850== by 0xB9FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409850== by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409850== by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409850== by 0x66E4D38: PetscInitialize (pinit.c:924) ==409850== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409850== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409850== by 0x14372D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==409850== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409850== by 0x14137A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409850== by 0x14121A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409850== by 0x1418B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409850== by 0x13BF25: main (TestVertexMesh.cpp:19) ==409850== ==409850== Open file descriptor 20: /dev/nvidia-uvm ==409850== at 0x8232764: open (open64.c:41) ==409850== by 0x12436F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x1241A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0xB4BB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409850== by 0xB4BBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409850== by 0x100CE46A: ??? ==409850== by 0xBB10F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409850== by 0xBAECB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409850== by 0xBA9BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409850== by 0xB9C8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409850== by 0x100BCF03: ??? ==409850== by 0xB9FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409850== by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409850== by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409850== by 0x66E4D38: PetscInitialize (pinit.c:924) ==409850== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409850== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409850== by 0x14372D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==409850== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409850== by 0x14137A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409850== by 0x14121A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409850== by 0x1418B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409850== by 0x13BF25: main (TestVertexMesh.cpp:19) ==409850== ==409850== Open file descriptor 19: /dev/nvidiactl ==409850== at 0x8232764: open (open64.c:41) ==409850== by 0x125CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x125D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x1241A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==409850== by 0xB4BB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409850== by 0xB4BBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==409850== by 0x100CE46A: ??? ==409850== by 0xBB10F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409850== by 0xBAECB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==409850== by 0xBA9BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409850== by 0xB9C8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409850== by 0x100BCF03: ??? ==409850== by 0xB9FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409850== by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409850== by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409850== by 0x66E4D38: PetscInitialize (pinit.c:924) ==409850== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409850== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409850== by 0x14372D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==409850== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409850== by 0x14137A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409850== by 0x14121A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409850== by 0x1418B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409850== by 0x13BF25: main (TestVertexMesh.cpp:19) ==409850== ==409850== Open file descriptor 12: ==409850== at 0x823322D: pipe (pipe.c:29) ==409850== by 0x100BC07D: ??? ==409850== by 0xB9FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409850== by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409850== by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409850== by 0x66E4D38: PetscInitialize (pinit.c:924) ==409850== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409850== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409850== by 0x14372D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==409850== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409850== by 0x14137A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409850== by 0x14121A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409850== by 0x1418B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409850== by 0x13BF25: main (TestVertexMesh.cpp:19) ==409850== ==409850== Open file descriptor 8: /dev/shm/open_mpi.0000 ==409850== at 0x8237BCC: __open_nocancel (open64_nocancel.c:39) ==409850== by 0x81BBC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==409850== by 0x6581822: ??? ==409850== by 0x658196F: ??? ==409850== by 0xBAA26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409850== by 0xBAA2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409850== by 0xBA58922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==409850== by 0xB9FD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==409850== by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409850== by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==409850== by 0x66E4D38: PetscInitialize (pinit.c:924) ==409850== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==409850== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==409850== by 0x14372D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==409850== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==409850== by 0x14137A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==409850== by 0x14121A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==409850== by 0x1418B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==409850== by 0x13BF25: main (TestVertexMesh.cpp:19) ==409850== ==409850== Open file descriptor 116: ==409850== ==409850== ==409850== Open file descriptor 113: ==409850== ==409850== ==409850== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMesh_valgrind.txt ==409850== ==409850== ==409850== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==409850== ==409850== ==409850== ==409850== HEAP SUMMARY: ==409850== in use at exit: 1,878,201 bytes in 11,739 blocks ==409850== total heap usage: 102,017 allocs, 90,278 frees, 1,541,085,707 bytes allocated ==409850== ==409850== LEAK SUMMARY: ==409850== definitely lost: 0 bytes in 0 blocks ==409850== indirectly lost: 0 bytes in 0 blocks ==409850== possibly lost: 0 bytes in 0 blocks ==409850== still reachable: 2,576 bytes in 3 blocks ==409850== suppressed: 1,875,625 bytes in 11,736 blocks ==409850== Reachable blocks (those to which a pointer was found) are not shown. ==409850== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==409850== ==409850== For lists of detected and suppressed errors, rerun with: -s ==409850== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 50 from 50)