==61058== Memcheck, a memory error detector ==61058== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==61058== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==61058== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==61058== Parent PID: 60806 ==61058== ==61058== ==61058== FILE DESCRIPTORS: 9 open (3 std) at exit. ==61058== Open file descriptor 12: ==61058== at 0x646422D: pipe (pipe.c:29) ==61058== by 0xAF1507D: ??? ==61058== by 0x8F444CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==61058== by 0x665E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==61058== by 0x65F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==61058== by 0x4A95D38: PetscInitialize (pinit.c:924) ==61058== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==61058== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==61058== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==61058== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==61058== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==61058== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==61058== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==61058== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==61058== ==61058== Open file descriptor 8: /dev/shm/open_mpi.0000 ==61058== at 0x6468BCC: __open_nocancel (open64_nocancel.c:39) ==61058== by 0x63ECC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==61058== by 0x5D25822: ??? ==61058== by 0x5D2596F: ??? ==61058== by 0x8FE96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==61058== by 0x8FE9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==61058== by 0x8F9F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==61058== by 0x8F442DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==61058== by 0x665E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==61058== by 0x65F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==61058== by 0x4A95D38: PetscInitialize (pinit.c:924) ==61058== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==61058== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==61058== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==61058== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==61058== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==61058== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==61058== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==61058== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==61058== ==61058== Open file descriptor 115: ==61058== ==61058== ==61058== Open file descriptor 112: ==61058== ==61058== ==61058== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==61058== ==61058== ==61058== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==61058== ==61058== ==61058== ==61058== HEAP SUMMARY: ==61058== in use at exit: 835,623 bytes in 11,686 blocks ==61058== total heap usage: 66,911 allocs, 55,225 frees, 1,550,526,645 bytes allocated ==61058== ==61058== LEAK SUMMARY: ==61058== definitely lost: 0 bytes in 0 blocks ==61058== indirectly lost: 0 bytes in 0 blocks ==61058== possibly lost: 0 bytes in 0 blocks ==61058== still reachable: 24 bytes in 2 blocks ==61058== suppressed: 835,599 bytes in 11,684 blocks ==61058== Reachable blocks (those to which a pointer was found) are not shown. ==61058== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==61058== ==61058== For lists of detected and suppressed errors, rerun with: -s ==61058== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35)