==61064== Memcheck, a memory error detector ==61064== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==61064== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==61064== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info ==61064== Parent PID: 60806 ==61064== ==61064== Warning: invalid file descriptor -1 in syscall close() ==61064== ==61064== FILE DESCRIPTORS: 9 open (3 std) at exit. ==61064== Open file descriptor 12: ==61064== at 0x659B22D: pipe (pipe.c:29) ==61064== by 0xAF1507D: ??? ==61064== by 0x8F444CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==61064== by 0x61EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==61064== by 0x6183D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==61064== by 0x4A95D38: PetscInitialize (pinit.c:924) ==61064== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==61064== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==61064== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==61064== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==61064== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==61064== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==61064== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==61064== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==61064== ==61064== Open file descriptor 8: /dev/shm/open_mpi.0000 ==61064== at 0x659FBCC: __open_nocancel (open64_nocancel.c:39) ==61064== by 0x6523C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==61064== by 0x5D25822: ??? ==61064== by 0x5D2596F: ??? ==61064== by 0x8FE96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==61064== by 0x8FE9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==61064== by 0x8F9F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==61064== by 0x8F442DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==61064== by 0x61EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==61064== by 0x6183D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==61064== by 0x4A95D38: PetscInitialize (pinit.c:924) ==61064== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==61064== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==61064== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==61064== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==61064== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==61064== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==61064== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==61064== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==61064== ==61064== Open file descriptor 115: ==61064== ==61064== ==61064== Open file descriptor 112: ==61064== ==61064== ==61064== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt ==61064== ==61064== ==61064== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==61064== ==61064== ==61064== ==61064== HEAP SUMMARY: ==61064== in use at exit: 835,623 bytes in 11,686 blocks ==61064== total heap usage: 123,163 allocs, 111,477 frees, 1,614,478,841 bytes allocated ==61064== ==61064== LEAK SUMMARY: ==61064== definitely lost: 0 bytes in 0 blocks ==61064== indirectly lost: 0 bytes in 0 blocks ==61064== possibly lost: 0 bytes in 0 blocks ==61064== still reachable: 24 bytes in 2 blocks ==61064== suppressed: 835,599 bytes in 11,684 blocks ==61064== Reachable blocks (those to which a pointer was found) are not shown. ==61064== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==61064== ==61064== For lists of detected and suppressed errors, rerun with: -s ==61064== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 98 from 35)