==163468== Memcheck, a memory error detector ==163468== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==163468== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==163468== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==163468== Parent PID: 162002 ==163468== ==163468== ==163468== FILE DESCRIPTORS: 9 open (3 std) at exit. ==163468== Open file descriptor 12: ==163468== at 0xD25122D: pipe (pipe.c:29) ==163468== by 0x18AE207D: ??? ==163468== by 0x140814CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==163468== by 0x104BF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==163468== by 0x10458D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==163468== by 0xF14FD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==163468== by 0xCE58153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==163468== by 0xCE581A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==163468== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==163468== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==163468== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==163468== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==163468== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==163468== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==163468== ==163468== Open file descriptor 8: /dev/shm/open_mpi.0000 ==163468== at 0xD255BCC: __open_nocancel (open64_nocancel.c:39) ==163468== by 0xD1D9C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==163468== by 0xCE8C822: ??? ==163468== by 0xCE8C96F: ??? ==163468== by 0x141266DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==163468== by 0x14126938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==163468== by 0x140DC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==163468== by 0x140812DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==163468== by 0x104BF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==163468== by 0x10458D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==163468== by 0xF14FD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==163468== by 0xCE58153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==163468== by 0xCE581A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==163468== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==163468== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==163468== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==163468== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==163468== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==163468== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==163468== ==163468== Open file descriptor 117: ==163468== ==163468== ==163468== Open file descriptor 115: ==163468== ==163468== ==163468== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==163468== ==163468== ==163468== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==163468== ==163468== ==163468== ==163468== HEAP SUMMARY: ==163468== in use at exit: 857,987 bytes in 12,112 blocks ==163468== total heap usage: 66,527 allocs, 54,415 frees, 1,543,732,774 bytes allocated ==163468== ==163468== LEAK SUMMARY: ==163468== definitely lost: 0 bytes in 0 blocks ==163468== indirectly lost: 0 bytes in 0 blocks ==163468== possibly lost: 0 bytes in 0 blocks ==163468== still reachable: 24 bytes in 2 blocks ==163468== suppressed: 857,963 bytes in 12,110 blocks ==163468== Reachable blocks (those to which a pointer was found) are not shown. ==163468== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==163468== ==163468== For lists of detected and suppressed errors, rerun with: -s ==163468== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)