==547437== Memcheck, a memory error detector
==547437== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==547437== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==547437== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayRemesher -malloc_debug -malloc_dump -memory_info
==547437== Parent PID: 531165
==547437== 
==547437== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints.
==547437==    This could cause spurious value errors to appear.
==547437==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==547437== Warning: noted but unhandled ioctl 0x27 with no size/direction hints.
==547437==    This could cause spurious value errors to appear.
==547437==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==547437== Warning: noted but unhandled ioctl 0x25 with no size/direction hints.
==547437==    This could cause spurious value errors to appear.
==547437==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==547437== Warning: noted but unhandled ioctl 0x17 with no size/direction hints.
==547437==    This could cause spurious value errors to appear.
==547437==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==547437== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess)
==547437== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess)
==547437== Warning: set address range perms: large range [0x1391f000, 0x3391e000) (noaccess)
==547437== 
==547437== FILE DESCRIPTORS: 14 open (3 std) at exit.
==547437== Open file descriptor 23: /dev/nvidia0
==547437==    at 0x7E9D7A4: open (open64.c:41)
==547437==    by 0x129CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x129CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x12A66B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x12954026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x1295D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x129D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x12A5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x1281A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0xB70E023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==547437==    by 0xB70EFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==547437==    by 0x1042346A: ???
==547437==    by 0xBD5FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==547437==    by 0xBD3BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==547437==    by 0xBCECCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==547437==    by 0xBC19EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==547437==    by 0x10411F03: ???
==547437==    by 0xBC4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==547437==    by 0x77A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==547437==    by 0x773FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==547437==    by 0x640BD38: PetscInitialize (pinit.c:924)
==547437==    by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==547437==    by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==547437==    by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==547437==    by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==547437==    by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==547437==    by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==547437==    by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==547437==    by 0x114955: main (TestAirwayRemesher.cpp:18)
==547437== 
==547437== Open file descriptor 22: /dev/nvidia0
==547437==    at 0x7E9D7A4: open (open64.c:41)
==547437==    by 0x129CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x129CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x1295407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x1295D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x129D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x12A5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x1281A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0xB70E023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==547437==    by 0xB70EFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==547437==    by 0x1042346A: ???
==547437==    by 0xBD5FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==547437==    by 0xBD3BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==547437==    by 0xBCECCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==547437==    by 0xBC19EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==547437==    by 0x10411F03: ???
==547437==    by 0xBC4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==547437==    by 0x77A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==547437==    by 0x773FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==547437==    by 0x640BD38: PetscInitialize (pinit.c:924)
==547437==    by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==547437==    by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==547437==    by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==547437==    by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==547437==    by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==547437==    by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==547437==    by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==547437==    by 0x114955: main (TestAirwayRemesher.cpp:18)
==547437== 
==547437== Open file descriptor 21: /dev/nvidia0
==547437==    at 0x7E9D7A4: open (open64.c:41)
==547437==    by 0x129CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x129CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x1295DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x129D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x12A5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x1281A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0xB70E023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==547437==    by 0xB70EFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==547437==    by 0x1042346A: ???
==547437==    by 0xBD5FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==547437==    by 0xBD3BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==547437==    by 0xBCECCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==547437==    by 0xBC19EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==547437==    by 0x10411F03: ???
==547437==    by 0xBC4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==547437==    by 0x77A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==547437==    by 0x773FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==547437==    by 0x640BD38: PetscInitialize (pinit.c:924)
==547437==    by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==547437==    by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==547437==    by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==547437==    by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==547437==    by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==547437==    by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==547437==    by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==547437==    by 0x114955: main (TestAirwayRemesher.cpp:18)
==547437== 
==547437== Open file descriptor 20: /dev/nvidia-uvm
==547437==    at 0x7E9D7A4: open (open64.c:41)
==547437==    by 0x12836F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x1281A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0xB70E023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==547437==    by 0xB70EFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==547437==    by 0x1042346A: ???
==547437==    by 0xBD5FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==547437==    by 0xBD3BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==547437==    by 0xBCECCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==547437==    by 0xBC19EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==547437==    by 0x10411F03: ???
==547437==    by 0xBC4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==547437==    by 0x77A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==547437==    by 0x773FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==547437==    by 0x640BD38: PetscInitialize (pinit.c:924)
==547437==    by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==547437==    by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==547437==    by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==547437==    by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==547437==    by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==547437==    by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==547437==    by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==547437==    by 0x114955: main (TestAirwayRemesher.cpp:18)
==547437== 
==547437== Open file descriptor 19: /dev/nvidiactl
==547437==    at 0x7E9D7A4: open (open64.c:41)
==547437==    by 0x129CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x129D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x1281A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==547437==    by 0xB70E023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==547437==    by 0xB70EFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==547437==    by 0x1042346A: ???
==547437==    by 0xBD5FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==547437==    by 0xBD3BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==547437==    by 0xBCECCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==547437==    by 0xBC19EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==547437==    by 0x10411F03: ???
==547437==    by 0xBC4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==547437==    by 0x77A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==547437==    by 0x773FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==547437==    by 0x640BD38: PetscInitialize (pinit.c:924)
==547437==    by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==547437==    by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==547437==    by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==547437==    by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==547437==    by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==547437==    by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==547437==    by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==547437==    by 0x114955: main (TestAirwayRemesher.cpp:18)
==547437== 
==547437== Open file descriptor 12:
==547437==    at 0x7E9E26D: pipe (pipe.c:29)
==547437==    by 0x1041107D: ???
==547437==    by 0xBC4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==547437==    by 0x77A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==547437==    by 0x773FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==547437==    by 0x640BD38: PetscInitialize (pinit.c:924)
==547437==    by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==547437==    by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==547437==    by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==547437==    by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==547437==    by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==547437==    by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==547437==    by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==547437==    by 0x114955: main (TestAirwayRemesher.cpp:18)
==547437== 
==547437== Open file descriptor 8: /dev/shm/open_mpi.0000
==547437==    at 0x7EA2C0C: __open_nocancel (open64_nocancel.c:39)
==547437==    by 0x7E26BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==547437==    by 0x7695822: ???
==547437==    by 0x769596F: ???
==547437==    by 0xBCF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==547437==    by 0xBCF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==547437==    by 0xBCA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==547437==    by 0xBC4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==547437==    by 0x77A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==547437==    by 0x773FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==547437==    by 0x640BD38: PetscInitialize (pinit.c:924)
==547437==    by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==547437==    by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==547437==    by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==547437==    by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==547437==    by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==547437==    by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==547437==    by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==547437==    by 0x114955: main (TestAirwayRemesher.cpp:18)
==547437== 
==547437== Open file descriptor 115:
==547437==    <inherited from parent>
==547437== 
==547437== Open file descriptor 112:
==547437==    <inherited from parent>
==547437== 
==547437== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayRemesher_valgrind.txt
==547437==    <inherited from parent>
==547437== 
==547437== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==547437==    <inherited from parent>
==547437== 
==547437== 
==547437== HEAP SUMMARY:
==547437==     in use at exit: 1,875,707 bytes in 11,734 blocks
==547437==   total heap usage: 11,605,435 allocs, 11,593,701 frees, 1,992,137,357 bytes allocated
==547437== 
==547437== LEAK SUMMARY:
==547437==    definitely lost: 0 bytes in 0 blocks
==547437==    indirectly lost: 0 bytes in 0 blocks
==547437==      possibly lost: 0 bytes in 0 blocks
==547437==    still reachable: 24 bytes in 2 blocks
==547437==         suppressed: 1,875,683 bytes in 11,732 blocks
==547437== Reachable blocks (those to which a pointer was found) are not shown.
==547437== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==547437== 
==547437== For lists of detected and suppressed errors, rerun with: -s
==547437== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 46)