==547576== Memcheck, a memory error detector ==547576== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==547576== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==547576== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainWithSvi -malloc_debug -malloc_dump -memory_info ==547576== Parent PID: 531165 ==547576== ==547576== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==547576== This could cause spurious value errors to appear. ==547576== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==547576== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==547576== This could cause spurious value errors to appear. ==547576== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==547576== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==547576== This could cause spurious value errors to appear. ==547576== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==547576== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==547576== This could cause spurious value errors to appear. ==547576== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==547576== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==547576== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==547576== Warning: set address range perms: large range [0x1732e000, 0x3732d000) (noaccess) ==547576== ==547576== FILE DESCRIPTORS: 14 open (3 std) at exit. ==547576== Open file descriptor 23: /dev/nvidia0 ==547576== at 0xA4567A4: open (open64.c:41) ==547576== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x16466B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x16354026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x163D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0xF271023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547576== by 0xF271FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547576== by 0x13FA646A: ??? ==547576== by 0xF8C2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547576== by 0xF89EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547576== by 0xF84FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547576== by 0xF77CEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547576== by 0x13F94F03: ??? ==547576== by 0xF7B14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547576== by 0xBB4F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547576== by 0xBAE8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547576== by 0xA7DFD38: PetscInitialize (pinit.c:924) ==547576== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547576== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547576== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==547576== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547576== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547576== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547576== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547576== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) ==547576== ==547576== Open file descriptor 22: /dev/nvidia0 ==547576== at 0xA4567A4: open (open64.c:41) ==547576== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x1635407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x163D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0xF271023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547576== by 0xF271FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547576== by 0x13FA646A: ??? ==547576== by 0xF8C2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547576== by 0xF89EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547576== by 0xF84FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547576== by 0xF77CEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547576== by 0x13F94F03: ??? ==547576== by 0xF7B14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547576== by 0xBB4F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547576== by 0xBAE8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547576== by 0xA7DFD38: PetscInitialize (pinit.c:924) ==547576== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547576== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547576== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==547576== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547576== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547576== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547576== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547576== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) ==547576== ==547576== Open file descriptor 21: /dev/nvidia0 ==547576== at 0xA4567A4: open (open64.c:41) ==547576== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x163CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x1635DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x163D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0xF271023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547576== by 0xF271FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547576== by 0x13FA646A: ??? ==547576== by 0xF8C2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547576== by 0xF89EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547576== by 0xF84FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547576== by 0xF77CEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547576== by 0x13F94F03: ??? ==547576== by 0xF7B14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547576== by 0xBB4F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547576== by 0xBAE8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547576== by 0xA7DFD38: PetscInitialize (pinit.c:924) ==547576== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547576== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547576== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==547576== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547576== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547576== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547576== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547576== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) ==547576== ==547576== Open file descriptor 20: /dev/nvidia-uvm ==547576== at 0xA4567A4: open (open64.c:41) ==547576== by 0x16236F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x1621A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0xF271023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547576== by 0xF271FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547576== by 0x13FA646A: ??? ==547576== by 0xF8C2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547576== by 0xF89EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547576== by 0xF84FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547576== by 0xF77CEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547576== by 0x13F94F03: ??? ==547576== by 0xF7B14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547576== by 0xBB4F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547576== by 0xBAE8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547576== by 0xA7DFD38: PetscInitialize (pinit.c:924) ==547576== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547576== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547576== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==547576== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547576== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547576== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547576== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547576== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) ==547576== ==547576== Open file descriptor 19: /dev/nvidiactl ==547576== at 0xA4567A4: open (open64.c:41) ==547576== by 0x163CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x163D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x1621A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547576== by 0xF271023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547576== by 0xF271FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547576== by 0x13FA646A: ??? ==547576== by 0xF8C2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547576== by 0xF89EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547576== by 0xF84FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547576== by 0xF77CEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547576== by 0x13F94F03: ??? ==547576== by 0xF7B14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547576== by 0xBB4F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547576== by 0xBAE8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547576== by 0xA7DFD38: PetscInitialize (pinit.c:924) ==547576== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547576== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547576== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==547576== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547576== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547576== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547576== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547576== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) ==547576== ==547576== Open file descriptor 12: ==547576== at 0xA45726D: pipe (pipe.c:29) ==547576== by 0x13F9407D: ??? ==547576== by 0xF7B14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547576== by 0xBB4F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547576== by 0xBAE8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547576== by 0xA7DFD38: PetscInitialize (pinit.c:924) ==547576== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547576== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547576== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==547576== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547576== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547576== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547576== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547576== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) ==547576== ==547576== Open file descriptor 8: /dev/shm/open_mpi.0000 ==547576== at 0xA45BC0C: __open_nocancel (open64_nocancel.c:39) ==547576== by 0xA3DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==547576== by 0x9D6B822: ??? ==547576== by 0x9D6B96F: ??? ==547576== by 0xF8566DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547576== by 0xF856938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547576== by 0xF80C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547576== by 0xF7B12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547576== by 0xBB4F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547576== by 0xBAE8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547576== by 0xA7DFD38: PetscInitialize (pinit.c:924) ==547576== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547576== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547576== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==547576== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547576== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547576== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547576== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547576== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) ==547576== ==547576== Open file descriptor 115: ==547576== ==547576== ==547576== Open file descriptor 112: ==547576== ==547576== ==547576== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainWithSvi_valgrind.txt ==547576== ==547576== ==547576== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==547576== ==547576== ==547576== ==547576== HEAP SUMMARY: ==547576== in use at exit: 1,876,253 bytes in 11,744 blocks ==547576== total heap usage: 3,548,573 allocs, 3,536,829 frees, 2,241,264,367 bytes allocated ==547576== ==547576== LEAK SUMMARY: ==547576== definitely lost: 0 bytes in 0 blocks ==547576== indirectly lost: 0 bytes in 0 blocks ==547576== possibly lost: 0 bytes in 0 blocks ==547576== still reachable: 24 bytes in 2 blocks ==547576== suppressed: 1,876,229 bytes in 11,742 blocks ==547576== Reachable blocks (those to which a pointer was found) are not shown. ==547576== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==547576== ==547576== For lists of detected and suppressed errors, rerun with: -s ==547576== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 88 from 50)