==546879== Memcheck, a memory error detector
==546879== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==546879== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==546879== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCellBetaCateninWriter -malloc_debug -malloc_dump -memory_info
==546879== Parent PID: 531165
==546879== 
==546879== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints.
==546879==    This could cause spurious value errors to appear.
==546879==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==546879== Warning: noted but unhandled ioctl 0x27 with no size/direction hints.
==546879==    This could cause spurious value errors to appear.
==546879==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==546879== Warning: noted but unhandled ioctl 0x25 with no size/direction hints.
==546879==    This could cause spurious value errors to appear.
==546879==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==546879== Warning: noted but unhandled ioctl 0x17 with no size/direction hints.
==546879==    This could cause spurious value errors to appear.
==546879==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==546879== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess)
==546879== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess)
==546879== Warning: set address range perms: large range [0x1db1f000, 0x3db1e000) (noaccess)
==546879== 
==546879== FILE DESCRIPTORS: 14 open (3 std) at exit.
==546879== Open file descriptor 23: /dev/nvidia0
==546879==    at 0x104767A4: open (open64.c:41)
==546879==    by 0x1CBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CBCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CC66B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CB54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CB5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CBD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x153B0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==546879==    by 0x153B0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==546879==    by 0x1A6F446A: ???
==546879==    by 0x15A01F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==546879==    by 0x159DDB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==546879==    by 0x1598ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==546879==    by 0x158BBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==546879==    by 0x1A6E2F03: ???
==546879==    by 0x158F04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==546879==    by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==546879==    by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==546879==    by 0x10E4AD38: PetscInitialize (pinit.c:924)
==546879==    by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==546879==    by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==546879==    by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==546879==    by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==546879==    by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==546879==    by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==546879==    by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==546879==    by 0x12E905: main (TestCellBetaCateninWriter.cpp:18)
==546879== 
==546879== Open file descriptor 22: /dev/nvidia0
==546879==    at 0x104767A4: open (open64.c:41)
==546879==    by 0x1CBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CBCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CB5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CB5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CBD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x153B0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==546879==    by 0x153B0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==546879==    by 0x1A6F446A: ???
==546879==    by 0x15A01F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==546879==    by 0x159DDB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==546879==    by 0x1598ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==546879==    by 0x158BBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==546879==    by 0x1A6E2F03: ???
==546879==    by 0x158F04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==546879==    by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==546879==    by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==546879==    by 0x10E4AD38: PetscInitialize (pinit.c:924)
==546879==    by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==546879==    by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==546879==    by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==546879==    by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==546879==    by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==546879==    by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==546879==    by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==546879==    by 0x12E905: main (TestCellBetaCateninWriter.cpp:18)
==546879== 
==546879== Open file descriptor 21: /dev/nvidia0
==546879==    at 0x104767A4: open (open64.c:41)
==546879==    by 0x1CBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CBCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CB5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CBD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x153B0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==546879==    by 0x153B0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==546879==    by 0x1A6F446A: ???
==546879==    by 0x15A01F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==546879==    by 0x159DDB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==546879==    by 0x1598ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==546879==    by 0x158BBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==546879==    by 0x1A6E2F03: ???
==546879==    by 0x158F04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==546879==    by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==546879==    by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==546879==    by 0x10E4AD38: PetscInitialize (pinit.c:924)
==546879==    by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==546879==    by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==546879==    by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==546879==    by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==546879==    by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==546879==    by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==546879==    by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==546879==    by 0x12E905: main (TestCellBetaCateninWriter.cpp:18)
==546879== 
==546879== Open file descriptor 20: /dev/nvidia-uvm
==546879==    at 0x104767A4: open (open64.c:41)
==546879==    by 0x1CA36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CA1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x153B0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==546879==    by 0x153B0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==546879==    by 0x1A6F446A: ???
==546879==    by 0x15A01F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==546879==    by 0x159DDB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==546879==    by 0x1598ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==546879==    by 0x158BBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==546879==    by 0x1A6E2F03: ???
==546879==    by 0x158F04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==546879==    by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==546879==    by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==546879==    by 0x10E4AD38: PetscInitialize (pinit.c:924)
==546879==    by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==546879==    by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==546879==    by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==546879==    by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==546879==    by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==546879==    by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==546879==    by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==546879==    by 0x12E905: main (TestCellBetaCateninWriter.cpp:18)
==546879== 
==546879== Open file descriptor 19: /dev/nvidiactl
==546879==    at 0x104767A4: open (open64.c:41)
==546879==    by 0x1CBCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CBD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1CA1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==546879==    by 0x153B0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==546879==    by 0x153B0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==546879==    by 0x1A6F446A: ???
==546879==    by 0x15A01F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==546879==    by 0x159DDB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==546879==    by 0x1598ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==546879==    by 0x158BBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==546879==    by 0x1A6E2F03: ???
==546879==    by 0x158F04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==546879==    by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==546879==    by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==546879==    by 0x10E4AD38: PetscInitialize (pinit.c:924)
==546879==    by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==546879==    by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==546879==    by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==546879==    by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==546879==    by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==546879==    by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==546879==    by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==546879==    by 0x12E905: main (TestCellBetaCateninWriter.cpp:18)
==546879== 
==546879== Open file descriptor 12:
==546879==    at 0x1047726D: pipe (pipe.c:29)
==546879==    by 0x1A6E207D: ???
==546879==    by 0x158F04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==546879==    by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==546879==    by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==546879==    by 0x10E4AD38: PetscInitialize (pinit.c:924)
==546879==    by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==546879==    by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==546879==    by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==546879==    by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==546879==    by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==546879==    by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==546879==    by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==546879==    by 0x12E905: main (TestCellBetaCateninWriter.cpp:18)
==546879== 
==546879== Open file descriptor 8: /dev/shm/open_mpi.0000
==546879==    at 0x1047BC0C: __open_nocancel (open64_nocancel.c:39)
==546879==    by 0x103FFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==546879==    by 0xFD63822: ???
==546879==    by 0xFD6396F: ???
==546879==    by 0x159956DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==546879==    by 0x15995938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==546879==    by 0x1594B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==546879==    by 0x158F02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==546879==    by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==546879==    by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==546879==    by 0x10E4AD38: PetscInitialize (pinit.c:924)
==546879==    by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==546879==    by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==546879==    by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==546879==    by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==546879==    by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==546879==    by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==546879==    by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==546879==    by 0x12E905: main (TestCellBetaCateninWriter.cpp:18)
==546879== 
==546879== Open file descriptor 115:
==546879==    <inherited from parent>
==546879== 
==546879== Open file descriptor 112:
==546879==    <inherited from parent>
==546879== 
==546879== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBetaCateninWriter_valgrind.txt
==546879==    <inherited from parent>
==546879== 
==546879== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==546879==    <inherited from parent>
==546879== 
==546879== 
==546879== HEAP SUMMARY:
==546879==     in use at exit: 1,875,997 bytes in 11,740 blocks
==546879==   total heap usage: 71,259 allocs, 59,519 frees, 1,535,674,039 bytes allocated
==546879== 
==546879== LEAK SUMMARY:
==546879==    definitely lost: 0 bytes in 0 blocks
==546879==    indirectly lost: 0 bytes in 0 blocks
==546879==      possibly lost: 0 bytes in 0 blocks
==546879==    still reachable: 136 bytes in 4 blocks
==546879==         suppressed: 1,875,861 bytes in 11,736 blocks
==546879== Reachable blocks (those to which a pointer was found) are not shown.
==546879== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==546879== 
==546879== For lists of detected and suppressed errors, rerun with: -s
==546879== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)