==549511== Memcheck, a memory error detector
==549511== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==549511== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==549511== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCheckpointing -malloc_debug -malloc_dump -memory_info
==549511== Parent PID: 531165
==549511== 
==549511== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints.
==549511==    This could cause spurious value errors to appear.
==549511==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==549511== Warning: noted but unhandled ioctl 0x27 with no size/direction hints.
==549511==    This could cause spurious value errors to appear.
==549511==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==549511== Warning: noted but unhandled ioctl 0x25 with no size/direction hints.
==549511==    This could cause spurious value errors to appear.
==549511==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==549511== Warning: noted but unhandled ioctl 0x17 with no size/direction hints.
==549511==    This could cause spurious value errors to appear.
==549511==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==549511== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess)
==549511== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess)
==549511== Warning: set address range perms: large range [0x1732e000, 0x3732d000) (noaccess)
==549511== 
==549511== FILE DESCRIPTORS: 14 open (3 std) at exit.
==549511== Open file descriptor 23: /dev/nvidia0
==549511==    at 0xA43A7A4: open (open64.c:41)
==549511==    by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x16466B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x16354026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x163D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0xF271023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==549511==    by 0xF271FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==549511==    by 0x13FA646A: ???
==549511==    by 0xF8C2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==549511==    by 0xF89EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==549511==    by 0xF84FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==549511==    by 0xF77CEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==549511==    by 0x13F94F03: ???
==549511==    by 0xF7B14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==549511==    by 0xBB33418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==549511==    by 0xBACCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==549511==    by 0xA7C3D38: PetscInitialize (pinit.c:924)
==549511==    by 0x9D1B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==549511==    by 0x9D1B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==549511==    by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==549511==    by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==549511==    by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==549511==    by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==549511==    by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==549511==    by 0x11CCF5: main (TestCheckpointing.cpp:18)
==549511== 
==549511== Open file descriptor 22: /dev/nvidia0
==549511==    at 0xA43A7A4: open (open64.c:41)
==549511==    by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x1635407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x163D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0xF271023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==549511==    by 0xF271FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==549511==    by 0x13FA646A: ???
==549511==    by 0xF8C2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==549511==    by 0xF89EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==549511==    by 0xF84FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==549511==    by 0xF77CEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==549511==    by 0x13F94F03: ???
==549511==    by 0xF7B14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==549511==    by 0xBB33418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==549511==    by 0xBACCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==549511==    by 0xA7C3D38: PetscInitialize (pinit.c:924)
==549511==    by 0x9D1B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==549511==    by 0x9D1B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==549511==    by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==549511==    by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==549511==    by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==549511==    by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==549511==    by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==549511==    by 0x11CCF5: main (TestCheckpointing.cpp:18)
==549511== 
==549511== Open file descriptor 21: /dev/nvidia0
==549511==    at 0xA43A7A4: open (open64.c:41)
==549511==    by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x163CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x1635DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x163D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0xF271023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==549511==    by 0xF271FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==549511==    by 0x13FA646A: ???
==549511==    by 0xF8C2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==549511==    by 0xF89EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==549511==    by 0xF84FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==549511==    by 0xF77CEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==549511==    by 0x13F94F03: ???
==549511==    by 0xF7B14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==549511==    by 0xBB33418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==549511==    by 0xBACCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==549511==    by 0xA7C3D38: PetscInitialize (pinit.c:924)
==549511==    by 0x9D1B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==549511==    by 0x9D1B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==549511==    by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==549511==    by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==549511==    by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==549511==    by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==549511==    by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==549511==    by 0x11CCF5: main (TestCheckpointing.cpp:18)
==549511== 
==549511== Open file descriptor 20: /dev/nvidia-uvm
==549511==    at 0xA43A7A4: open (open64.c:41)
==549511==    by 0x16236F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x1621A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0xF271023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==549511==    by 0xF271FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==549511==    by 0x13FA646A: ???
==549511==    by 0xF8C2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==549511==    by 0xF89EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==549511==    by 0xF84FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==549511==    by 0xF77CEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==549511==    by 0x13F94F03: ???
==549511==    by 0xF7B14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==549511==    by 0xBB33418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==549511==    by 0xBACCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==549511==    by 0xA7C3D38: PetscInitialize (pinit.c:924)
==549511==    by 0x9D1B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==549511==    by 0x9D1B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==549511==    by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==549511==    by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==549511==    by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==549511==    by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==549511==    by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==549511==    by 0x11CCF5: main (TestCheckpointing.cpp:18)
==549511== 
==549511== Open file descriptor 19: /dev/nvidiactl
==549511==    at 0xA43A7A4: open (open64.c:41)
==549511==    by 0x163CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x163D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x1621A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==549511==    by 0xF271023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==549511==    by 0xF271FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==549511==    by 0x13FA646A: ???
==549511==    by 0xF8C2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==549511==    by 0xF89EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==549511==    by 0xF84FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==549511==    by 0xF77CEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==549511==    by 0x13F94F03: ???
==549511==    by 0xF7B14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==549511==    by 0xBB33418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==549511==    by 0xBACCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==549511==    by 0xA7C3D38: PetscInitialize (pinit.c:924)
==549511==    by 0x9D1B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==549511==    by 0x9D1B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==549511==    by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==549511==    by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==549511==    by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==549511==    by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==549511==    by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==549511==    by 0x11CCF5: main (TestCheckpointing.cpp:18)
==549511== 
==549511== Open file descriptor 12:
==549511==    at 0xA43B26D: pipe (pipe.c:29)
==549511==    by 0x13F9407D: ???
==549511==    by 0xF7B14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==549511==    by 0xBB33418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==549511==    by 0xBACCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==549511==    by 0xA7C3D38: PetscInitialize (pinit.c:924)
==549511==    by 0x9D1B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==549511==    by 0x9D1B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==549511==    by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==549511==    by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==549511==    by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==549511==    by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==549511==    by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==549511==    by 0x11CCF5: main (TestCheckpointing.cpp:18)
==549511== 
==549511== Open file descriptor 8: /dev/shm/open_mpi.0000
==549511==    at 0xA43FC0C: __open_nocancel (open64_nocancel.c:39)
==549511==    by 0xA3C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==549511==    by 0x9D4F822: ???
==549511==    by 0x9D4F96F: ???
==549511==    by 0xF8566DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==549511==    by 0xF856938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==549511==    by 0xF80C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==549511==    by 0xF7B12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==549511==    by 0xBB33418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==549511==    by 0xBACCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==549511==    by 0xA7C3D38: PetscInitialize (pinit.c:924)
==549511==    by 0x9D1B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==549511==    by 0x9D1B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==549511==    by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==549511==    by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==549511==    by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==549511==    by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==549511==    by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==549511==    by 0x11CCF5: main (TestCheckpointing.cpp:18)
==549511== 
==549511== Open file descriptor 115:
==549511==    <inherited from parent>
==549511== 
==549511== Open file descriptor 112:
==549511==    <inherited from parent>
==549511== 
==549511== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCheckpointing_valgrind.txt
==549511==    <inherited from parent>
==549511== 
==549511== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==549511==    <inherited from parent>
==549511== 
==549511== 
==549511== HEAP SUMMARY:
==549511==     in use at exit: 1,876,283 bytes in 11,744 blocks
==549511==   total heap usage: 843,591 allocs, 831,847 frees, 1,638,376,016 bytes allocated
==549511== 
==549511== LEAK SUMMARY:
==549511==    definitely lost: 0 bytes in 0 blocks
==549511==    indirectly lost: 0 bytes in 0 blocks
==549511==      possibly lost: 0 bytes in 0 blocks
==549511==    still reachable: 24 bytes in 2 blocks
==549511==         suppressed: 1,876,259 bytes in 11,742 blocks
==549511== Reachable blocks (those to which a pointer was found) are not shown.
==549511== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==549511== 
==549511== For lists of detected and suppressed errors, rerun with: -s
==549511== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 76 from 50)