==548399== Memcheck, a memory error detector ==548399== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==548399== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==548399== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCodegenPresent -malloc_debug -malloc_dump -memory_info ==548399== Parent PID: 531165 ==548399== ==548399== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==548399== This could cause spurious value errors to appear. ==548399== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==548399== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==548399== This could cause spurious value errors to appear. ==548399== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==548399== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==548399== This could cause spurious value errors to appear. ==548399== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==548399== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==548399== This could cause spurious value errors to appear. ==548399== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==548399== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==548399== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==548399== Warning: set address range perms: large range [0x1011f000, 0x3011e000) (noaccess) ==548399== ==548399== FILE DESCRIPTORS: 14 open (3 std) at exit. ==548399== Open file descriptor 23: /dev/nvidia0 ==548399== at 0x616F7A4: open (open64.c:41) ==548399== by 0xF1CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF1CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF266B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF154026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF15D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF1D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF25FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF01A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0x8480023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==548399== by 0x8480FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==548399== by 0xAEB646A: ??? ==548399== by 0x8AD5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==548399== by 0x8AB1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==548399== by 0x8A62CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==548399== by 0x898DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==548399== by 0xAEA4F03: ??? ==548399== by 0x89C24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==548399== by 0x5DBF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==548399== by 0x5D58D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==548399== by 0x4A22D38: PetscInitialize (pinit.c:924) ==548399== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==548399== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==548399== by 0x112059: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==548399== by 0x10DE93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==548399== by 0x110114: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==548399== by 0x11000F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==548399== by 0x110623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==548399== by 0x10C695: main (TestCodegenPresent.cpp:18) ==548399== ==548399== Open file descriptor 22: /dev/nvidia0 ==548399== at 0x616F7A4: open (open64.c:41) ==548399== by 0xF1CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF1CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF15407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF15D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF1D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF25FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF01A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0x8480023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==548399== by 0x8480FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==548399== by 0xAEB646A: ??? ==548399== by 0x8AD5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==548399== by 0x8AB1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==548399== by 0x8A62CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==548399== by 0x898DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==548399== by 0xAEA4F03: ??? ==548399== by 0x89C24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==548399== by 0x5DBF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==548399== by 0x5D58D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==548399== by 0x4A22D38: PetscInitialize (pinit.c:924) ==548399== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==548399== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==548399== by 0x112059: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==548399== by 0x10DE93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==548399== by 0x110114: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==548399== by 0x11000F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==548399== by 0x110623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==548399== by 0x10C695: main (TestCodegenPresent.cpp:18) ==548399== ==548399== Open file descriptor 21: /dev/nvidia0 ==548399== at 0x616F7A4: open (open64.c:41) ==548399== by 0xF1CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF1CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF15DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF1D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF25FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF01A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0x8480023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==548399== by 0x8480FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==548399== by 0xAEB646A: ??? ==548399== by 0x8AD5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==548399== by 0x8AB1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==548399== by 0x8A62CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==548399== by 0x898DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==548399== by 0xAEA4F03: ??? ==548399== by 0x89C24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==548399== by 0x5DBF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==548399== by 0x5D58D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==548399== by 0x4A22D38: PetscInitialize (pinit.c:924) ==548399== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==548399== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==548399== by 0x112059: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==548399== by 0x10DE93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==548399== by 0x110114: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==548399== by 0x11000F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==548399== by 0x110623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==548399== by 0x10C695: main (TestCodegenPresent.cpp:18) ==548399== ==548399== Open file descriptor 20: /dev/nvidia-uvm ==548399== at 0x616F7A4: open (open64.c:41) ==548399== by 0xF036F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF01A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0x8480023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==548399== by 0x8480FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==548399== by 0xAEB646A: ??? ==548399== by 0x8AD5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==548399== by 0x8AB1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==548399== by 0x8A62CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==548399== by 0x898DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==548399== by 0xAEA4F03: ??? ==548399== by 0x89C24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==548399== by 0x5DBF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==548399== by 0x5D58D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==548399== by 0x4A22D38: PetscInitialize (pinit.c:924) ==548399== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==548399== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==548399== by 0x112059: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==548399== by 0x10DE93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==548399== by 0x110114: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==548399== by 0x11000F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==548399== by 0x110623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==548399== by 0x10C695: main (TestCodegenPresent.cpp:18) ==548399== ==548399== Open file descriptor 19: /dev/nvidiactl ==548399== at 0x616F7A4: open (open64.c:41) ==548399== by 0xF1CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF1D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xF01A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==548399== by 0x8480023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==548399== by 0x8480FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==548399== by 0xAEB646A: ??? ==548399== by 0x8AD5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==548399== by 0x8AB1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==548399== by 0x8A62CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==548399== by 0x898DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==548399== by 0xAEA4F03: ??? ==548399== by 0x89C24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==548399== by 0x5DBF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==548399== by 0x5D58D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==548399== by 0x4A22D38: PetscInitialize (pinit.c:924) ==548399== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==548399== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==548399== by 0x112059: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==548399== by 0x10DE93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==548399== by 0x110114: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==548399== by 0x11000F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==548399== by 0x110623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==548399== by 0x10C695: main (TestCodegenPresent.cpp:18) ==548399== ==548399== Open file descriptor 12: ==548399== at 0x617026D: pipe (pipe.c:29) ==548399== by 0xAEA407D: ??? ==548399== by 0x89C24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==548399== by 0x5DBF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==548399== by 0x5D58D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==548399== by 0x4A22D38: PetscInitialize (pinit.c:924) ==548399== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==548399== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==548399== by 0x112059: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==548399== by 0x10DE93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==548399== by 0x110114: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==548399== by 0x11000F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==548399== by 0x110623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==548399== by 0x10C695: main (TestCodegenPresent.cpp:18) ==548399== ==548399== Open file descriptor 8: /dev/shm/open_mpi.0000 ==548399== at 0x6174C0C: __open_nocancel (open64_nocancel.c:39) ==548399== by 0x60F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==548399== by 0x5CAC822: ??? ==548399== by 0x5CAC96F: ??? ==548399== by 0x8A696DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==548399== by 0x8A69938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==548399== by 0x8A1F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==548399== by 0x89C22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==548399== by 0x5DBF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==548399== by 0x5D58D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==548399== by 0x4A22D38: PetscInitialize (pinit.c:924) ==548399== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==548399== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==548399== by 0x112059: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==548399== by 0x10DE93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==548399== by 0x110114: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==548399== by 0x11000F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==548399== by 0x110623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==548399== by 0x10C695: main (TestCodegenPresent.cpp:18) ==548399== ==548399== Open file descriptor 115: ==548399== ==548399== ==548399== Open file descriptor 112: ==548399== ==548399== ==548399== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCodegenPresent_valgrind.txt ==548399== ==548399== ==548399== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==548399== ==548399== ==548399== ==548399== HEAP SUMMARY: ==548399== in use at exit: 1,875,254 bytes in 11,738 blocks ==548399== total heap usage: 53,448 allocs, 41,710 frees, 1,532,788,873 bytes allocated ==548399== ==548399== LEAK SUMMARY: ==548399== definitely lost: 0 bytes in 0 blocks ==548399== indirectly lost: 0 bytes in 0 blocks ==548399== possibly lost: 0 bytes in 0 blocks ==548399== still reachable: 24 bytes in 2 blocks ==548399== suppressed: 1,875,230 bytes in 11,736 blocks ==548399== Reachable blocks (those to which a pointer was found) are not shown. ==548399== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==548399== ==548399== For lists of detected and suppressed errors, rerun with: -s ==548399== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 50 from 50)