==547722== Memcheck, a memory error detector ==547722== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==547722== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==547722== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeCells -malloc_debug -malloc_dump -memory_info ==547722== Parent PID: 531165 ==547722== ==547722== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==547722== This could cause spurious value errors to appear. ==547722== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==547722== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==547722== This could cause spurious value errors to appear. ==547722== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==547722== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==547722== This could cause spurious value errors to appear. ==547722== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==547722== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==547722== This could cause spurious value errors to appear. ==547722== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==547722== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==547722== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==547722== Warning: set address range perms: large range [0x1732e000, 0x3732d000) (noaccess) ==547722== ==547722== FILE DESCRIPTORS: 14 open (3 std) at exit. ==547722== Open file descriptor 23: /dev/nvidia0 ==547722== at 0x9D237A4: open (open64.c:41) ==547722== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x16466B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x16354026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x163D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0xE553023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547722== by 0xE553FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547722== by 0x13FA746A: ??? ==547722== by 0xEBA8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547722== by 0xEB84B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547722== by 0xEB35CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547722== by 0xEA60EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547722== by 0x13F95F03: ??? ==547722== by 0xEA954CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547722== by 0x9957418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547722== by 0x98F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547722== by 0x85E7D38: PetscInitialize (pinit.c:924) ==547722== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547722== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547722== by 0x1363CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==547722== by 0x130B8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547722== by 0x133882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547722== by 0x133722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547722== by 0x133DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547722== by 0x12BB65: main (TestCvodeCells.cpp:19) ==547722== ==547722== Open file descriptor 22: /dev/nvidia0 ==547722== at 0x9D237A4: open (open64.c:41) ==547722== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x1635407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x163D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0xE553023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547722== by 0xE553FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547722== by 0x13FA746A: ??? ==547722== by 0xEBA8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547722== by 0xEB84B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547722== by 0xEB35CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547722== by 0xEA60EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547722== by 0x13F95F03: ??? ==547722== by 0xEA954CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547722== by 0x9957418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547722== by 0x98F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547722== by 0x85E7D38: PetscInitialize (pinit.c:924) ==547722== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547722== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547722== by 0x1363CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==547722== by 0x130B8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547722== by 0x133882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547722== by 0x133722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547722== by 0x133DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547722== by 0x12BB65: main (TestCvodeCells.cpp:19) ==547722== ==547722== Open file descriptor 21: /dev/nvidia0 ==547722== at 0x9D237A4: open (open64.c:41) ==547722== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x163CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x1635DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x163D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0xE553023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547722== by 0xE553FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547722== by 0x13FA746A: ??? ==547722== by 0xEBA8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547722== by 0xEB84B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547722== by 0xEB35CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547722== by 0xEA60EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547722== by 0x13F95F03: ??? ==547722== by 0xEA954CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547722== by 0x9957418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547722== by 0x98F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547722== by 0x85E7D38: PetscInitialize (pinit.c:924) ==547722== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547722== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547722== by 0x1363CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==547722== by 0x130B8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547722== by 0x133882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547722== by 0x133722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547722== by 0x133DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547722== by 0x12BB65: main (TestCvodeCells.cpp:19) ==547722== ==547722== Open file descriptor 20: /dev/nvidia-uvm ==547722== at 0x9D237A4: open (open64.c:41) ==547722== by 0x16236F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x1621A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0xE553023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547722== by 0xE553FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547722== by 0x13FA746A: ??? ==547722== by 0xEBA8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547722== by 0xEB84B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547722== by 0xEB35CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547722== by 0xEA60EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547722== by 0x13F95F03: ??? ==547722== by 0xEA954CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547722== by 0x9957418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547722== by 0x98F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547722== by 0x85E7D38: PetscInitialize (pinit.c:924) ==547722== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547722== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547722== by 0x1363CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==547722== by 0x130B8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547722== by 0x133882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547722== by 0x133722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547722== by 0x133DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547722== by 0x12BB65: main (TestCvodeCells.cpp:19) ==547722== ==547722== Open file descriptor 19: /dev/nvidiactl ==547722== at 0x9D237A4: open (open64.c:41) ==547722== by 0x163CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x163D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x1621A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547722== by 0xE553023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547722== by 0xE553FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547722== by 0x13FA746A: ??? ==547722== by 0xEBA8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547722== by 0xEB84B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547722== by 0xEB35CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547722== by 0xEA60EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547722== by 0x13F95F03: ??? ==547722== by 0xEA954CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547722== by 0x9957418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547722== by 0x98F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547722== by 0x85E7D38: PetscInitialize (pinit.c:924) ==547722== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547722== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547722== by 0x1363CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==547722== by 0x130B8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547722== by 0x133882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547722== by 0x133722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547722== by 0x133DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547722== by 0x12BB65: main (TestCvodeCells.cpp:19) ==547722== ==547722== Open file descriptor 12: ==547722== at 0x9D2426D: pipe (pipe.c:29) ==547722== by 0x13F9507D: ??? ==547722== by 0xEA954CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547722== by 0x9957418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547722== by 0x98F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547722== by 0x85E7D38: PetscInitialize (pinit.c:924) ==547722== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547722== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547722== by 0x1363CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==547722== by 0x130B8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547722== by 0x133882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547722== by 0x133722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547722== by 0x133DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547722== by 0x12BB65: main (TestCvodeCells.cpp:19) ==547722== ==547722== Open file descriptor 8: /dev/shm/open_mpi.0000 ==547722== at 0x9D28C0C: __open_nocancel (open64_nocancel.c:39) ==547722== by 0x9CACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==547722== by 0x8486822: ??? ==547722== by 0x848696F: ??? ==547722== by 0xEB3C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547722== by 0xEB3C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547722== by 0xEAF2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547722== by 0xEA952DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547722== by 0x9957418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547722== by 0x98F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547722== by 0x85E7D38: PetscInitialize (pinit.c:924) ==547722== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547722== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547722== by 0x1363CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==547722== by 0x130B8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547722== by 0x133882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547722== by 0x133722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547722== by 0x133DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547722== by 0x12BB65: main (TestCvodeCells.cpp:19) ==547722== ==547722== Open file descriptor 115: ==547722== ==547722== ==547722== Open file descriptor 112: ==547722== ==547722== ==547722== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeCells_valgrind.txt ==547722== ==547722== ==547722== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==547722== ==547722== ==547722== ==547722== HEAP SUMMARY: ==547722== in use at exit: 1,877,575 bytes in 11,738 blocks ==547722== total heap usage: 239,479 allocs, 227,741 frees, 1,558,576,411 bytes allocated ==547722== ==547722== LEAK SUMMARY: ==547722== definitely lost: 0 bytes in 0 blocks ==547722== indirectly lost: 0 bytes in 0 blocks ==547722== possibly lost: 0 bytes in 0 blocks ==547722== still reachable: 1,831 bytes in 6 blocks ==547722== suppressed: 1,875,744 bytes in 11,732 blocks ==547722== Reachable blocks (those to which a pointer was found) are not shown. ==547722== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==547722== ==547722== For lists of detected and suppressed errors, rerun with: -s ==547722== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 49 from 49)