==531928== Memcheck, a memory error detector ==531928== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==531928== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==531928== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestGRL1IvpOdeSolver -malloc_debug -malloc_dump -memory_info ==531928== Parent PID: 531165 ==531928== ==531928== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==531928== This could cause spurious value errors to appear. ==531928== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==531928== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==531928== This could cause spurious value errors to appear. ==531928== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==531928== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==531928== This could cause spurious value errors to appear. ==531928== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==531928== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==531928== This could cause spurious value errors to appear. ==531928== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==531928== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==531928== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==531928== Warning: set address range perms: large range [0x1051f000, 0x3051e000) (noaccess) ==531928== ==531928== FILE DESCRIPTORS: 14 open (3 std) at exit. ==531928== Open file descriptor 23: /dev/nvidia0 ==531928== at 0x50407A4: open (open64.c:41) ==531928== by 0xF5CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF5CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF666B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF554026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF55D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF5D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF65FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF41A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF3648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0x87A3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==531928== by 0x87A3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==531928== by 0xB1F846A: ??? ==531928== by 0x8DF6F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==531928== by 0x8DD2B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==531928== by 0x8D83CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==531928== by 0x8CB0EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==531928== by 0xB1E6F03: ??? ==531928== by 0x8CE54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==531928== by 0x667F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==531928== by 0x6618D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==531928== by 0x530FD38: PetscInitialize (pinit.c:924) ==531928== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==531928== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==531928== by 0x1271A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==531928== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==531928== by 0x1242F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==531928== by 0x124199: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==531928== by 0x12482F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==531928== by 0x11EEA5: main (TestGRL1IvpOdeSolver.cpp:19) ==531928== ==531928== Open file descriptor 22: /dev/nvidia0 ==531928== at 0x50407A4: open (open64.c:41) ==531928== by 0xF5CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF5CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF55407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF55D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF5D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF65FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF41A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF3648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0x87A3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==531928== by 0x87A3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==531928== by 0xB1F846A: ??? ==531928== by 0x8DF6F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==531928== by 0x8DD2B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==531928== by 0x8D83CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==531928== by 0x8CB0EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==531928== by 0xB1E6F03: ??? ==531928== by 0x8CE54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==531928== by 0x667F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==531928== by 0x6618D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==531928== by 0x530FD38: PetscInitialize (pinit.c:924) ==531928== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==531928== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==531928== by 0x1271A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==531928== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==531928== by 0x1242F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==531928== by 0x124199: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==531928== by 0x12482F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==531928== by 0x11EEA5: main (TestGRL1IvpOdeSolver.cpp:19) ==531928== ==531928== Open file descriptor 21: /dev/nvidia0 ==531928== at 0x50407A4: open (open64.c:41) ==531928== by 0xF5CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF5CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF55DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF5D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF65FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF41A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF3648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0x87A3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==531928== by 0x87A3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==531928== by 0xB1F846A: ??? ==531928== by 0x8DF6F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==531928== by 0x8DD2B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==531928== by 0x8D83CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==531928== by 0x8CB0EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==531928== by 0xB1E6F03: ??? ==531928== by 0x8CE54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==531928== by 0x667F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==531928== by 0x6618D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==531928== by 0x530FD38: PetscInitialize (pinit.c:924) ==531928== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==531928== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==531928== by 0x1271A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==531928== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==531928== by 0x1242F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==531928== by 0x124199: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==531928== by 0x12482F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==531928== by 0x11EEA5: main (TestGRL1IvpOdeSolver.cpp:19) ==531928== ==531928== Open file descriptor 20: /dev/nvidia-uvm ==531928== at 0x50407A4: open (open64.c:41) ==531928== by 0xF436F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF41A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF3648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0x87A3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==531928== by 0x87A3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==531928== by 0xB1F846A: ??? ==531928== by 0x8DF6F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==531928== by 0x8DD2B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==531928== by 0x8D83CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==531928== by 0x8CB0EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==531928== by 0xB1E6F03: ??? ==531928== by 0x8CE54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==531928== by 0x667F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==531928== by 0x6618D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==531928== by 0x530FD38: PetscInitialize (pinit.c:924) ==531928== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==531928== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==531928== by 0x1271A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==531928== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==531928== by 0x1242F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==531928== by 0x124199: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==531928== by 0x12482F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==531928== by 0x11EEA5: main (TestGRL1IvpOdeSolver.cpp:19) ==531928== ==531928== Open file descriptor 19: /dev/nvidiactl ==531928== at 0x50407A4: open (open64.c:41) ==531928== by 0xF5CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF5D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF41A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0xF3648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==531928== by 0x87A3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==531928== by 0x87A3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==531928== by 0xB1F846A: ??? ==531928== by 0x8DF6F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==531928== by 0x8DD2B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==531928== by 0x8D83CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==531928== by 0x8CB0EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==531928== by 0xB1E6F03: ??? ==531928== by 0x8CE54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==531928== by 0x667F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==531928== by 0x6618D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==531928== by 0x530FD38: PetscInitialize (pinit.c:924) ==531928== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==531928== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==531928== by 0x1271A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==531928== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==531928== by 0x1242F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==531928== by 0x124199: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==531928== by 0x12482F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==531928== by 0x11EEA5: main (TestGRL1IvpOdeSolver.cpp:19) ==531928== ==531928== Open file descriptor 12: ==531928== at 0x504126D: pipe (pipe.c:29) ==531928== by 0xB1E607D: ??? ==531928== by 0x8CE54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==531928== by 0x667F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==531928== by 0x6618D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==531928== by 0x530FD38: PetscInitialize (pinit.c:924) ==531928== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==531928== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==531928== by 0x1271A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==531928== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==531928== by 0x1242F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==531928== by 0x124199: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==531928== by 0x12482F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==531928== by 0x11EEA5: main (TestGRL1IvpOdeSolver.cpp:19) ==531928== ==531928== Open file descriptor 8: /dev/shm/open_mpi.0000 ==531928== at 0x5045C0C: __open_nocancel (open64_nocancel.c:39) ==531928== by 0x4FC9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==531928== by 0x4B71822: ??? ==531928== by 0x4B7196F: ??? ==531928== by 0x8D8A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==531928== by 0x8D8A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==531928== by 0x8D40922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==531928== by 0x8CE52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==531928== by 0x667F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==531928== by 0x6618D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==531928== by 0x530FD38: PetscInitialize (pinit.c:924) ==531928== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==531928== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==531928== by 0x1271A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==531928== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==531928== by 0x1242F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==531928== by 0x124199: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==531928== by 0x12482F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==531928== by 0x11EEA5: main (TestGRL1IvpOdeSolver.cpp:19) ==531928== ==531928== Open file descriptor 115: ==531928== ==531928== ==531928== Open file descriptor 112: ==531928== ==531928== ==531928== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGRL1IvpOdeSolver_valgrind.txt ==531928== ==531928== ==531928== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==531928== ==531928== ==531928== ==531928== HEAP SUMMARY: ==531928== in use at exit: 1,875,334 bytes in 11,738 blocks ==531928== total heap usage: 59,523 allocs, 47,785 frees, 1,533,293,387 bytes allocated ==531928== ==531928== LEAK SUMMARY: ==531928== definitely lost: 0 bytes in 0 blocks ==531928== indirectly lost: 0 bytes in 0 blocks ==531928== possibly lost: 0 bytes in 0 blocks ==531928== still reachable: 24 bytes in 2 blocks ==531928== suppressed: 1,875,310 bytes in 11,736 blocks ==531928== Reachable blocks (those to which a pointer was found) are not shown. ==531928== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==531928== ==531928== For lists of detected and suppressed errors, rerun with: -s ==531928== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 50 from 50)